SRR2936674.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936674.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	280638
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG	2353	0.8384466822026954	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC	2097	0.7472259636970047	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC	1626	0.5793940948838004	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1200	0.42759711799542466	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	828	0.29504201141684305	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	528	0.18814273191798686	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCT	379	0.13504942310022164	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT	320	0.11402589813211325	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTC	302	0.10761194136218188	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGA	25	3.8832448E-5	45.000004	24
ATCTAGT	25	3.8832448E-5	45.000004	15
GCGTTAG	35	1.2075361E-7	45.000004	1
GCGATTA	25	3.8832448E-5	45.000004	9
TAGGGCG	35	1.2075361E-7	45.000004	5
CGGTCTA	25	3.8832448E-5	45.000004	31
GTACAAC	20	7.024166E-4	45.0	26
CGGCCAA	20	7.024166E-4	45.0	21
GGTATCG	20	7.024166E-4	45.0	8
GTATCGA	20	7.024166E-4	45.0	9
ACACTGC	20	7.024166E-4	45.0	32
CCTGCGT	20	7.024166E-4	45.0	23
CGATAAT	20	7.024166E-4	45.0	12
TACGGCT	240	0.0	43.125004	7
ACACGAC	65	0.0	41.538464	26
CGAATAT	60	3.6379788E-12	41.250004	14
TACGGGT	45	1.9193976E-8	40.0	4
GTCGGGA	85	0.0	39.705883	4
TCAAGCG	75	0.0	39.0	17
GACACGA	70	0.0	38.57143	25