SRR2936673.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936673.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	724006
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTC	7395	1.0214003751350127	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCG	6380	0.8812081667831482	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGC	6183	0.853998447526678	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTT	3252	0.4491675483352348	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2877	0.3973723974663193	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC	1894	0.2616000419886023	No Hit
GAACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCT	1489	0.20566127905017362	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCT	1157	0.1598053054808938	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTC	1111	0.15345176697430685	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTA	737	0.10179473650770851	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCAT	25	3.889371E-5	45.0	40
GCACGTA	20	7.031555E-4	45.0	45
TCGACGT	25	3.889371E-5	45.0	26
TTCGACG	25	3.889371E-5	45.0	25
TATCGCG	25	3.889371E-5	45.0	1
TACGGCT	795	0.0	40.18868	7
ACTACGG	45	1.9266736E-8	40.0	2
CGGGTAC	40	3.4558616E-7	39.375	6
ATACCGG	40	3.4558616E-7	39.375	2
GTTTACG	35	6.2450854E-6	38.57143	1
ATTCGGC	35	6.2450854E-6	38.57143	17
ACGGCTG	915	0.0	38.114754	8
TTTACGG	65	9.094947E-12	38.07692	2
CACGACC	30	1.1395043E-4	37.500004	27
GCCGATA	30	1.1395043E-4	37.500004	9
TACTACG	30	1.1395043E-4	37.500004	1
ACGACCA	30	1.1395043E-4	37.500004	28
CGTTTTT	1440	0.0	37.1875	1
CGGTCTA	55	2.746674E-9	36.81818	31
TTACGGG	160	0.0	36.5625	3