SRR2936670.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936670.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	694679
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGC	5187	0.7466758027808528	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCG	5061	0.7285379290290911	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTC	4947	0.7121274718251164	RNA PCR Primer, Index 41 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2382	0.34289218473568367	No Hit
GCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGC	1633	0.2350726018779897	Illumina PCR Primer Index 3 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCT	1243	0.17893156407491806	TruSeq Adapter, Index 11 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCT	927	0.13344292831653182	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTC	851	0.12250262351388196	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAGG	25	3.889206E-5	45.0	2
GATGCGT	25	3.889206E-5	45.0	11
ATAACGC	20	7.031357E-4	45.0	11
TAGGACG	25	3.889206E-5	45.0	1
TATCGTG	25	3.889206E-5	45.0	28
TCGAGGG	135	0.0	41.666664	3
CGTTTTT	1155	0.0	40.51948	1
TACGGCT	680	0.0	39.705883	7
TACGAAT	40	3.4555887E-7	39.375	12
CGGTCTA	40	3.4555887E-7	39.375	31
CATGACG	35	6.2447198E-6	38.57143	1
TCGACCG	35	6.2447198E-6	38.57143	24
CGAAATA	30	1.1394569E-4	37.500004	37
TAGCACG	30	1.1394569E-4	37.500004	1
CTCGCGA	30	1.1394569E-4	37.500004	14
CACAACG	85	0.0	37.058823	12
CTTCGAA	25	0.0021065357	36.0	27
CTCACGA	50	4.874164E-8	36.0	24
TTCACGC	25	0.0021065357	36.0	34
TACGGAC	25	0.0021065357	36.0	43