##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936670.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 694679 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15087400079749 31.0 31.0 33.0 28.0 34.0 2 31.182333135160267 31.0 31.0 34.0 28.0 34.0 3 31.018589881081766 31.0 31.0 34.0 28.0 34.0 4 34.97184454978486 35.0 35.0 37.0 32.0 37.0 5 35.17387887067264 35.0 35.0 37.0 33.0 37.0 6 35.11808619520671 36.0 35.0 37.0 32.0 37.0 7 30.950225931689314 35.0 35.0 37.0 0.0 37.0 8 32.963499688345266 35.0 35.0 37.0 17.0 37.0 9 36.21419389387041 39.0 35.0 39.0 32.0 39.0 10 36.04449393172962 37.0 35.0 39.0 32.0 39.0 11 36.24630656749376 37.0 35.0 39.0 32.0 39.0 12 36.28226130342215 38.0 35.0 39.0 32.0 39.0 13 36.174564079236596 38.0 35.0 39.0 32.0 39.0 14 37.117133237077844 39.0 36.0 40.0 31.0 41.0 15 37.28636679675073 39.0 36.0 41.0 32.0 41.0 16 37.33432995671382 39.0 36.0 40.0 32.0 41.0 17 37.230385544978326 39.0 36.0 40.0 32.0 41.0 18 37.173177827456996 39.0 36.0 40.0 32.0 41.0 19 37.0102407011008 39.0 35.0 40.0 31.0 41.0 20 36.92395624453884 39.0 35.0 40.0 31.0 41.0 21 36.967613818756575 39.0 35.0 40.0 31.0 41.0 22 37.09346187231801 39.0 35.0 40.0 32.0 41.0 23 37.17298637212295 39.0 35.0 40.0 32.0 41.0 24 37.09471568882894 39.0 35.0 40.0 32.0 41.0 25 36.823650923664026 39.0 35.0 40.0 31.0 41.0 26 36.7701758653997 39.0 35.0 40.0 31.0 41.0 27 36.79347583560177 39.0 35.0 40.0 31.0 41.0 28 36.76892348840256 39.0 35.0 40.0 31.0 41.0 29 36.700568176092844 39.0 35.0 40.0 31.0 41.0 30 36.4768605355855 38.0 35.0 40.0 30.0 41.0 31 36.476611499699864 39.0 35.0 40.0 30.0 41.0 32 36.32722739567484 38.0 35.0 40.0 30.0 41.0 33 36.21022515435187 38.0 35.0 40.0 30.0 41.0 34 36.091607778556714 38.0 35.0 40.0 30.0 41.0 35 36.00437180337969 38.0 35.0 40.0 29.0 41.0 36 35.98123881677724 38.0 35.0 40.0 29.0 41.0 37 35.85958838542694 38.0 35.0 40.0 29.0 41.0 38 35.761818048335996 38.0 35.0 40.0 29.0 41.0 39 35.685448962758336 38.0 35.0 40.0 28.0 41.0 40 35.57799501640326 38.0 35.0 40.0 27.0 41.0 41 35.37049198262795 38.0 34.0 40.0 27.0 41.0 42 35.39665802478555 38.0 34.0 40.0 27.0 41.0 43 35.39063797811651 38.0 34.0 40.0 27.0 41.0 44 35.23730960630737 38.0 34.0 40.0 27.0 41.0 45 35.177025647817196 38.0 34.0 40.0 26.0 41.0 46 35.10909787110305 38.0 34.0 40.0 26.0 41.0 47 35.01291963626365 37.0 34.0 40.0 26.0 41.0 48 34.922187082091156 37.0 34.0 40.0 26.0 41.0 49 34.825666242969774 37.0 34.0 40.0 26.0 41.0 50 34.65277919729832 37.0 34.0 40.0 25.0 41.0 51 32.97015312108182 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 19.0 9 61.0 10 88.0 11 60.0 12 45.0 13 38.0 14 41.0 15 70.0 16 127.0 17 237.0 18 528.0 19 852.0 20 1310.0 21 1954.0 22 2905.0 23 3867.0 24 5204.0 25 7120.0 26 8408.0 27 9941.0 28 11158.0 29 13306.0 30 16776.0 31 21241.0 32 27747.0 33 38555.0 34 55941.0 35 59407.0 36 70297.0 37 101708.0 38 130998.0 39 104665.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.034037303560346 19.74192396776065 22.23789692793362 12.98614180074538 2 31.75797742554475 26.4087441825649 24.610935410455763 17.22234298143459 3 32.48334842423623 24.959297747592775 26.23197188917471 16.325381938996284 4 28.29220402516846 24.529746832709783 28.059290693975203 19.118758448146554 5 27.44145137538345 28.32718421026114 24.891784550850105 19.339579863505303 6 26.134948659740687 35.74514272059469 24.801527036228244 13.318381583436379 7 68.44211499124056 17.764895728818633 10.087968687696042 3.7050205922447637 8 79.05968080221224 7.612724726096514 8.914908900369811 4.412685571321431 9 73.3757606030987 7.345694918084468 10.346793267106102 8.931751211710733 10 45.11436217303243 21.604366909032805 18.545688008418278 14.73558290951648 11 32.573749890237075 24.097028987489185 24.260701705391988 19.068519416881756 12 29.33210878693612 22.226956623130974 27.8964816843463 20.54445290558661 13 26.005248467277692 22.481318709792582 32.049766870741735 19.463665952187988 14 21.385416861600824 26.547081457766826 30.46990048641171 21.59760119422064 15 19.522829968949686 25.016158542290757 35.38310500245437 20.077906486305185 16 24.32792699937669 25.091013259361517 28.98892869944248 21.592131041819314 17 25.13995672821548 24.38003739856826 28.49848635125 21.981519521966263 18 24.890632939818246 24.7046477581732 29.236237168533957 21.168482133474598 19 25.47421183021223 25.933272777786577 26.911710300728824 21.680805091272372 20 25.411736931733937 26.712049738080466 28.815179385010918 19.061033945174678 21 25.44139091580428 26.44444412455249 29.65614334102514 18.458021618618094 22 24.419624027788377 22.537459747595655 29.941454974167925 23.10146125044805 23 23.59118384174561 25.453770734396752 30.313281386079037 20.6417640377786 24 23.431973616591257 24.814482660336644 28.961002131919923 22.792541591152172 25 23.583698370038537 27.856175298231268 26.722270285988202 21.83785604574199 26 22.178013154277014 25.36120999771117 27.8980651495151 24.562711698496717 27 22.613034221561325 26.42198770943126 28.55174836147343 22.413229707533983 28 21.44674014904726 25.66825828908028 29.854508341262655 23.030493220609806 29 24.00907469493104 25.536110923174586 28.23232025151185 22.222494130382522 30 23.646749074032755 25.467590066779046 29.648657869318058 21.237002989870142 31 25.726702548947067 25.06855684424029 26.883207927690343 22.3215326791223 32 26.54880887431461 26.748757339720935 26.0700265878197 20.632407198144755 33 25.34407978361229 24.890345037060282 26.157261123482932 23.6083140558445 34 24.484546099709362 25.732892458243306 28.365187374312452 21.417374067734883 35 23.08605845289695 26.410327647733702 28.853470451820197 21.650143447549155 36 27.894610316419527 25.850932589008735 25.95803241497152 20.296424679600218 37 23.13557772726684 28.334669681968215 28.22195575222513 20.307796838539815 38 24.403213570584402 26.66109094992076 26.37203658092443 22.56365889857042 39 23.645453511621913 26.432352208717987 27.019817786344486 22.902376493315618 40 23.7963145567953 24.066799197902917 29.795920130016885 22.340966115284903 41 23.10736325698632 25.678766739745985 27.8186039883169 23.395266014950792 42 22.46274898190387 24.82038466687492 30.6871231172959 22.02974323392531 43 23.82093024260126 24.3618995248165 27.962267464541174 23.854902768041068 44 22.816437520063225 24.86817652469702 28.98864079668451 23.326745158555244 45 22.114530596145844 24.960737261382597 27.524655272435183 25.400076870036376 46 23.814020576410112 26.083989871580975 27.746340396067826 22.35564915594109 47 21.04497185030784 25.368119663902323 31.075791840547932 22.511116645241902 48 21.927825657605887 26.805906037176886 28.564272131444884 22.701996173772347 49 22.867684210980897 24.711989278501292 29.799374963112456 22.620951547405348 50 22.06328390522817 25.251231144168745 28.98921660220044 23.696268348402644 51 21.83598467781522 25.276134732732675 27.610450294308592 25.27743029514351 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 171.0 1 732.0 2 1293.0 3 2974.5 4 4656.0 5 3243.0 6 1830.0 7 1763.0 8 1696.0 9 1633.5 10 1571.0 11 1599.5 12 1628.0 13 1638.5 14 1649.0 15 1709.5 16 1770.0 17 1630.5 18 1491.0 19 1623.5 20 1756.0 21 2100.0 22 2444.0 23 2842.5 24 3241.0 25 3482.0 26 4690.5 27 5658.0 28 7007.0 29 8356.0 30 10151.5 31 11947.0 32 13495.0 33 15043.0 34 17905.0 35 20767.0 36 21619.0 37 22471.0 38 24813.5 39 27156.0 40 29326.0 41 31496.0 42 34527.0 43 37558.0 44 40146.5 45 42735.0 46 55369.5 47 68004.0 48 61650.0 49 55296.0 50 53951.0 51 52606.0 52 47646.0 53 42686.0 54 40708.0 55 38730.0 56 38018.0 57 37306.0 58 35487.0 59 33668.0 60 30900.5 61 28133.0 62 26741.0 63 25349.0 64 22699.0 65 20049.0 66 17286.5 67 14524.0 68 12195.5 69 9867.0 70 8402.0 71 6937.0 72 5581.0 73 4225.0 74 3293.0 75 1943.5 76 1526.0 77 1012.5 78 499.0 79 415.5 80 332.0 81 277.5 82 223.0 83 174.5 84 126.0 85 96.5 86 67.0 87 44.0 88 21.0 89 16.5 90 12.0 91 14.0 92 16.0 93 9.5 94 3.0 95 4.5 96 6.0 97 3.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 694679.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.997326123740887 #Duplication Level Percentage of deduplicated Percentage of total 1 73.1413102888398 22.67185048140892 2 8.514048929747009 5.278255026177103 3 3.799940078707885 3.533639456111457 4 2.359149422077208 2.9250929604304825 5 1.5721120198150467 2.4365634490629997 6 1.1579880157538949 2.1536719303024245 7 0.8445074257132865 1.8324230462128936 8 0.6502007881285962 1.612358870042836 9 0.5546106726863999 1.5472303103670884 >10 7.277644741246035 49.15467747956014 >50 0.09844554849862454 1.8829345311116155 >100 0.024495840702623003 1.4741989136971871 >500 0.0027731140418063775 0.5669003985908426 >1k 0.001848742694537585 1.462021371650126 >5k 9.243713472687925E-4 1.4681817752739335 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGC 5187 0.7466758027808528 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCG 5061 0.7285379290290911 No Hit GAATCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTC 4947 0.7121274718251164 RNA PCR Primer, Index 41 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2382 0.34289218473568367 No Hit GCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGC 1633 0.2350726018779897 Illumina PCR Primer Index 3 (95% over 22bp) GAACTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCT 1243 0.17893156407491806 TruSeq Adapter, Index 11 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCT 927 0.13344292831653182 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTC 851 0.12250262351388196 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05973982227762751 0.0 2 0.0 0.0 0.0 0.48122945993761146 0.0 3 0.0 0.0 0.0 0.592503875890879 0.0 4 0.0 0.0 0.0 0.9320851789099713 0.0 5 0.0 0.0 0.0 2.087294995242407 0.0 6 0.0 0.0 0.0 2.51324712565084 0.0 7 0.0 0.0 0.0 2.9517230260307277 0.0 8 0.0 0.0 0.0 3.6020953562724656 0.0 9 0.0 0.0 0.0 3.8331373195389524 0.0 10 0.0 0.0 0.0 5.089976809432846 0.0 11 1.4395137898223496E-4 0.0 0.0 5.651531138842545 0.0 12 1.4395137898223496E-4 0.0 0.0 6.949684674504339 0.0 13 1.4395137898223496E-4 0.0 0.0 7.16287666677703 1.4395137898223496E-4 14 2.879027579644699E-4 0.0 0.0 7.2829321168482135 1.4395137898223496E-4 15 2.879027579644699E-4 0.0 0.0 7.510807149777091 1.4395137898223496E-4 16 2.879027579644699E-4 0.0 0.0 7.810082066681158 1.4395137898223496E-4 17 2.879027579644699E-4 0.0 0.0 8.14577668246773 1.4395137898223496E-4 18 2.879027579644699E-4 0.0 0.0 8.50522327578637 1.4395137898223496E-4 19 2.879027579644699E-4 0.0 0.0 8.788375638244426 1.4395137898223496E-4 20 2.879027579644699E-4 0.0 0.0 9.04173006525316 1.4395137898223496E-4 21 2.879027579644699E-4 0.0 0.0 9.347482794211427 1.4395137898223496E-4 22 2.879027579644699E-4 0.0 0.0 9.67094154278451 1.4395137898223496E-4 23 2.879027579644699E-4 0.0 0.0 9.953230196968672 1.4395137898223496E-4 24 2.879027579644699E-4 0.0 0.0 10.205289061566566 1.4395137898223496E-4 25 2.879027579644699E-4 0.0 0.0 10.438634246896768 1.4395137898223496E-4 26 2.879027579644699E-4 0.0 0.0 10.64995487124269 1.4395137898223496E-4 27 2.879027579644699E-4 0.0 0.0 10.915545165464913 1.4395137898223496E-4 28 2.879027579644699E-4 0.0 0.0 11.148170593900204 1.4395137898223496E-4 29 4.3185413694670486E-4 0.0 0.0 11.433050372906047 1.4395137898223496E-4 30 4.3185413694670486E-4 0.0 0.0 11.763850641807224 1.4395137898223496E-4 31 4.3185413694670486E-4 0.0 0.0 12.040237289453115 1.4395137898223496E-4 32 4.3185413694670486E-4 0.0 0.0 12.29690259817844 1.4395137898223496E-4 33 4.3185413694670486E-4 0.0 0.0 12.549681219671244 1.4395137898223496E-4 34 4.3185413694670486E-4 0.0 0.0 12.818294492852095 1.4395137898223496E-4 35 4.3185413694670486E-4 0.0 0.0 13.139018165224513 1.4395137898223496E-4 36 4.3185413694670486E-4 0.0 0.0 13.420443111134784 1.4395137898223496E-4 37 4.3185413694670486E-4 0.0 0.0 13.711224896678898 1.4395137898223496E-4 38 4.3185413694670486E-4 0.0 0.0 14.0888093637493 1.4395137898223496E-4 39 4.3185413694670486E-4 0.0 0.0 14.749258290519794 1.4395137898223496E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGAGG 25 3.889206E-5 45.0 2 GATGCGT 25 3.889206E-5 45.0 11 ATAACGC 20 7.031357E-4 45.0 11 TAGGACG 25 3.889206E-5 45.0 1 TATCGTG 25 3.889206E-5 45.0 28 TCGAGGG 135 0.0 41.666664 3 CGTTTTT 1155 0.0 40.51948 1 TACGGCT 680 0.0 39.705883 7 TACGAAT 40 3.4555887E-7 39.375 12 CGGTCTA 40 3.4555887E-7 39.375 31 CATGACG 35 6.2447198E-6 38.57143 1 TCGACCG 35 6.2447198E-6 38.57143 24 CGAAATA 30 1.1394569E-4 37.500004 37 TAGCACG 30 1.1394569E-4 37.500004 1 CTCGCGA 30 1.1394569E-4 37.500004 14 CACAACG 85 0.0 37.058823 12 CTTCGAA 25 0.0021065357 36.0 27 CTCACGA 50 4.874164E-8 36.0 24 TTCACGC 25 0.0021065357 36.0 34 TACGGAC 25 0.0021065357 36.0 43 >>END_MODULE