SRR2936668.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936668.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	278908
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2587	0.9275460008318155	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGC	1956	0.7013065240150874	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCG	1840	0.6597157485622499	No Hit
GAATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTC	1677	0.6012735382276593	No Hit
GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	1131	0.4055100606651656	TruSeq Adapter, Index 22 (95% over 23bp)
GAATGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTT	563	0.2018586774133406	No Hit
CCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	435	0.1559654079481406	TruSeq Adapter, Index 22 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGCT	321	0.11509171483069687	TruSeq Adapter, Index 20 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCT	318	0.11401609132760623	No Hit
GAACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCT	308	0.11043067965063749	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTC	280	0.10039152695512497	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGACG	25	3.883185E-5	45.0	1
GATACCA	20	7.0240913E-4	45.0	45
TCGCACT	20	7.0240913E-4	45.0	25
CGACGTT	20	7.0240913E-4	45.0	27
CCGGCCG	20	7.0240913E-4	45.0	32
TAGCGTG	20	7.0240913E-4	45.0	1
TCGGCTG	20	7.0240913E-4	45.0	18
CTCGGCT	20	7.0240913E-4	45.0	17
GCCCTTA	20	7.0240913E-4	45.0	21
GCGATCA	20	7.0240913E-4	45.0	9
CGATGCA	20	7.0240913E-4	45.0	10
TCGACGT	20	7.0240913E-4	45.0	26
CGTTTTT	1255	0.0	43.924305	1
ACGGGCT	45	1.9193976E-8	40.000004	5
AGCGACT	40	3.4456752E-7	39.375	19
CGACTGG	40	3.4456752E-7	39.375	2
CGTTTTA	115	0.0	39.130432	1
AACGGGA	105	0.0	38.57143	4
GCCCCAC	35	6.2312884E-6	38.571426	34
GTGGACG	35	6.2312884E-6	38.571426	26