SRR2936664.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936664.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	208391
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	434	0.20826235298069495	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTC	373	0.17899045544193368	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGC	372	0.1785105882691671	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCG	328	0.15739643266743766	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	238	0.11420838711844561	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	221	0.10605064518141379	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAACGGG	30	2.1569213E-6	45.000004	3
CACAACG	30	2.1569213E-6	45.000004	12
GTTGATC	40	6.7684596E-9	45.0	16
TACGGGC	35	1.2055352E-7	45.0	4
TAGCCGG	20	7.019982E-4	45.0	2
GTTCGTT	20	7.019982E-4	45.0	23
CTGTTAG	40	6.7684596E-9	45.0	2
GCGATTT	20	7.019982E-4	45.0	9
ACGCTGG	20	7.019982E-4	45.0	2
CGGTCTA	20	7.019982E-4	45.0	31
CGTCATA	20	7.019982E-4	45.0	38
TACACGG	20	7.019982E-4	45.0	2
ACACGGG	55	6.002665E-11	40.909092	3
TGATCCG	40	3.4400728E-7	39.375	14
GCGAATG	35	6.2236977E-6	38.571426	1
GTCTCAC	35	6.2236977E-6	38.571426	22
TCGATCA	35	6.2236977E-6	38.571426	17
CTACGAA	35	6.2236977E-6	38.571426	11
CATACGA	35	6.2236977E-6	38.571426	18
ATTGCGG	35	6.2236977E-6	38.571426	2