SRR2936663.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936663.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	619932
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG	14606	2.356064858726441	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC	14468	2.3338043527354615	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC	12542	2.0231251169483104	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4875	0.7863765703335204	No Hit
GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	3382	0.545543704793429	No Hit
GAACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT	2721	0.43891910725692496	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCT	2717	0.4382738751992154	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTC	2307	0.372137589283986	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTA	1779	0.28696695766632474	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC	1394	0.22486337211177998	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG	1292	0.20840995464018633	No Hit
GAATCTATCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC	1272	0.20518379435163855	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTT	934	0.15066168547518116	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	754	0.12162624287825115	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGTA	20	7.0307683E-4	45.000004	24
CCTCGTG	20	7.0307683E-4	45.000004	17
ATACGGA	20	7.0307683E-4	45.000004	28
CGGTCTA	35	1.2107193E-7	45.0	31
TTGTACG	30	2.163877E-6	44.999996	1
TATAGCG	30	2.163877E-6	44.999996	1
TACGGCT	1615	0.0	43.46749	7
CGTTTTT	2690	0.0	42.99257	1
TGATACC	1540	0.0	42.66234	4
CGATGAA	450	0.0	42.0	19
GATACCT	1565	0.0	41.98083	5
ACGGCTG	1855	0.0	41.603775	8
ACAACGA	105	0.0	40.714287	13
TTAGCGG	105	0.0	40.714287	2
CACAACG	105	0.0	40.714287	12
CGGCTGT	1895	0.0	40.369392	9
ATACCTG	1645	0.0	40.07599	6
ACCACCG	800	0.0	39.65625	14
CTACGAA	125	0.0	39.600002	11
CGGTAGT	205	0.0	39.512196	12