##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936663.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 619932 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.055680300420047 31.0 31.0 33.0 28.0 34.0 2 31.09137937709297 31.0 31.0 34.0 28.0 34.0 3 30.859658801287882 31.0 30.0 34.0 27.0 34.0 4 34.832999425743466 35.0 35.0 37.0 32.0 37.0 5 35.03852035384526 35.0 35.0 37.0 32.0 37.0 6 34.97826213197577 35.0 35.0 37.0 32.0 37.0 7 31.031621210068202 35.0 35.0 37.0 0.0 37.0 8 32.84015021002303 35.0 33.0 37.0 17.0 37.0 9 35.87137621545589 38.0 34.0 39.0 32.0 39.0 10 35.941225811863234 37.0 35.0 39.0 32.0 39.0 11 36.161198324977576 37.0 35.0 39.0 32.0 39.0 12 36.220485472600224 37.0 35.0 39.0 32.0 39.0 13 35.99969835401302 38.0 35.0 39.0 31.0 39.0 14 37.13573424182007 39.0 36.0 40.0 32.0 41.0 15 37.1157110779892 39.0 36.0 40.0 31.0 41.0 16 37.29964415452017 39.0 36.0 40.0 32.0 41.0 17 36.977510436628535 39.0 35.0 40.0 31.0 41.0 18 36.9035587774143 39.0 35.0 40.0 31.0 41.0 19 36.69274210719885 38.0 35.0 40.0 31.0 41.0 20 36.512804630185244 38.0 35.0 40.0 30.0 41.0 21 36.757376615499766 38.0 35.0 40.0 31.0 41.0 22 36.82207887316673 39.0 35.0 40.0 31.0 41.0 23 36.9076285786183 39.0 35.0 40.0 31.0 41.0 24 36.7596075053393 38.0 35.0 40.0 31.0 41.0 25 36.61658698050754 38.0 35.0 40.0 31.0 41.0 26 36.42460786021693 38.0 35.0 40.0 30.0 41.0 27 36.48546614790009 38.0 35.0 40.0 31.0 41.0 28 36.38287263764413 38.0 35.0 40.0 30.0 41.0 29 36.29076576140609 38.0 35.0 40.0 30.0 41.0 30 36.08692566281463 38.0 35.0 40.0 30.0 41.0 31 36.037828342463364 38.0 35.0 40.0 30.0 41.0 32 35.843473155120236 38.0 35.0 40.0 29.0 41.0 33 35.621989185910714 38.0 35.0 40.0 27.0 41.0 34 35.463742797597156 38.0 35.0 40.0 27.0 41.0 35 35.412325867998426 38.0 35.0 40.0 26.0 41.0 36 35.24851274010698 38.0 34.0 40.0 25.0 41.0 37 35.20175115980462 38.0 34.0 40.0 26.0 41.0 38 34.97935902647387 38.0 34.0 40.0 24.0 41.0 39 35.0103511352858 38.0 34.0 40.0 25.0 41.0 40 34.889234625733145 38.0 34.0 40.0 24.0 41.0 41 34.717294800074846 38.0 34.0 40.0 23.0 41.0 42 34.66297110005613 38.0 34.0 40.0 23.0 41.0 43 34.64489653703954 38.0 34.0 40.0 23.0 41.0 44 34.51720995205926 37.0 33.0 40.0 23.0 41.0 45 34.446119897020964 37.0 33.0 40.0 23.0 41.0 46 34.33703696534459 37.0 33.0 40.0 23.0 41.0 47 34.15093590909971 37.0 33.0 40.0 23.0 41.0 48 34.1415429434196 37.0 33.0 40.0 23.0 41.0 49 34.058666111767096 36.0 33.0 40.0 23.0 41.0 50 33.890813831194386 36.0 33.0 40.0 22.0 41.0 51 32.17519824754973 35.0 30.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 22.0 9 44.0 10 55.0 11 39.0 12 42.0 13 19.0 14 32.0 15 47.0 16 121.0 17 228.0 18 625.0 19 1095.0 20 1807.0 21 2623.0 22 3382.0 23 4473.0 24 5912.0 25 7821.0 26 10002.0 27 10730.0 28 11917.0 29 13540.0 30 16263.0 31 20350.0 32 26737.0 33 36037.0 34 52894.0 35 56502.0 36 62082.0 37 85885.0 38 107026.0 39 81569.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.68679145454663 16.694734261177032 19.795396914500298 14.823077369776039 2 30.67594510365653 31.914790654458873 21.81303755895808 15.596226682926515 3 28.605556738481 31.8136505294129 25.78089209784299 13.799900634263112 4 26.207551796003433 21.581560558254775 35.24499461231232 16.96589303342947 5 30.98743087951582 25.00048392404328 24.492686294625862 19.519398901815038 6 23.086403024847886 38.05885161598369 26.227392681778 12.627352677390425 7 61.177838859745904 16.671667215113917 18.387661872592478 3.762832052547699 8 69.1669408902912 12.838504868275876 13.158862584928668 4.835691656504261 9 64.56853332300963 6.534265048424666 13.756024854338863 15.14117677422685 10 42.46062471367827 20.994883309782363 20.636456901724706 15.908035074814658 11 32.25757018511708 21.9833788221934 26.888594232915867 18.870456759773653 12 27.342031061471257 19.247272281476032 31.17616125639586 22.234535400656846 13 23.862294574243627 20.766955085396464 36.99050863643109 18.380241703928817 14 20.564997451333372 26.641631662827535 30.965331681539265 21.828039204299827 15 18.165379428711535 22.979133195253674 40.037778336978896 18.817709039055895 16 21.364762586864366 23.656788163863133 29.626475161791937 25.35197408748056 17 21.740287644451328 23.667111876786485 32.715523638076434 21.877076840685753 18 22.421330081363763 23.54758263809579 31.542007833117182 22.489079447423265 19 22.01434996096346 26.022208887426363 28.403760412432334 23.559680739177846 20 24.650768148764705 24.814818399437357 32.82779401611789 17.706619435680043 21 23.27335901356923 29.818270390946104 29.036087828987693 17.872282766496973 22 22.19501493712214 21.220391913951854 32.07997006123252 24.50462308769349 23 23.011556106153577 27.211210261770646 30.656265525896387 19.120968106179387 24 24.214591277753044 22.308737087293444 28.79735196763516 24.67931966731835 25 21.010046263138538 30.34913506642664 27.12958840647039 21.511230263964435 26 20.96471871108444 23.42950517153494 30.518508481575395 25.087267635805215 27 23.764219301471776 25.84960931198906 27.596091184194393 22.79008020234477 28 19.084673802933224 26.396282172883478 32.208209932702296 22.310834091481002 29 26.69163714730003 23.400308420923587 27.585283547227764 22.32277088454863 30 24.02440912874315 26.632598414019604 29.835046424446553 19.507946032790695 31 25.38068691404864 25.5571578818322 26.194324538820386 22.867830665298776 32 27.352838698437893 29.234012762690103 24.510107560184018 18.903040978687986 33 24.29960060135628 23.430473019621505 24.90805443177639 27.361871947245824 34 26.31530554964093 24.727712071646568 29.56759773652594 19.389384642186563 35 24.061832588090308 27.59592987617997 26.127704328861874 22.214533206867852 36 27.705941942019447 28.461992605640617 24.818044559725905 19.014020892614028 37 24.964350928811545 28.521676570978755 28.122600543285394 18.391371956924306 38 21.823683887910285 30.15330713691179 23.12898834065672 24.894020634521205 39 24.092319802817084 26.644212591058373 28.35020615164244 20.913261454482104 40 22.23179316441158 25.754598891491327 28.33972113070466 23.673886813392436 41 23.024138131278914 26.31095023325139 28.201318854325958 22.46359278114374 42 21.366053050979787 26.911661278978983 29.79617119296955 21.92611447707168 43 26.02672551183033 23.597910738597136 25.33519805398011 25.04016569559242 44 23.043656401024627 23.182058677403326 29.296116348244645 24.478168573327398 45 21.345244317118652 22.538278391823617 28.281650245510797 27.834827045546927 46 25.99268952078615 26.850041617467724 26.111412219404713 21.045856642341416 47 19.758134763167572 23.758734828981243 34.64928411503197 21.83384629281921 48 22.26534523141248 25.61732577121362 27.800145822445042 24.317183174928864 49 21.125704109482975 22.391972022737978 33.458669660543414 23.023654207235634 50 22.28421826910048 22.935096107314994 29.588406470387074 25.19227915319745 51 21.68576553557487 22.516179193847066 27.972261473839065 27.825793796738996 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 144.0 1 636.0 2 1128.0 3 5332.0 4 9536.0 5 6517.0 6 3498.0 7 3296.0 8 3094.0 9 3053.0 10 3012.0 11 2849.5 12 2687.0 13 2618.0 14 2549.0 15 2462.0 16 2375.0 17 2345.5 18 2316.0 19 2268.5 20 2221.0 21 2424.5 22 2628.0 23 2642.5 24 2657.0 25 3150.0 26 3745.5 27 3848.0 28 4994.0 29 6140.0 30 7340.5 31 8541.0 32 9505.5 33 10470.0 34 12583.5 35 14697.0 36 15870.0 37 17043.0 38 18452.0 39 19861.0 40 21476.5 41 23092.0 42 25965.0 43 28838.0 44 32003.5 45 35169.0 46 65463.0 47 95757.0 48 71543.0 49 47329.0 50 46076.5 51 44824.0 52 40259.5 53 35695.0 54 34191.5 55 32688.0 56 31496.5 57 30305.0 58 29811.0 59 29317.0 60 27176.5 61 25036.0 62 23257.0 63 21478.0 64 18721.5 65 15965.0 66 12877.5 67 9790.0 68 8766.5 69 7743.0 70 6624.0 71 5505.0 72 4738.5 73 3972.0 74 3192.0 75 1925.5 76 1439.0 77 1037.0 78 635.0 79 538.0 80 441.0 81 333.5 82 226.0 83 147.0 84 68.0 85 68.5 86 69.0 87 47.5 88 26.0 89 18.5 90 11.0 91 10.0 92 9.0 93 6.5 94 4.0 95 2.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 619932.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.08700895108612 #Duplication Level Percentage of deduplicated Percentage of total 1 74.63195877813115 22.45452411794722 2 8.316251991218166 5.004222961985374 3 3.556573263376973 3.2101995483124957 4 2.109414606314163 2.538639045669041 5 1.4128539559962592 2.125427481031844 6 1.0389732676147279 1.8755758801598101 7 0.831993417297937 1.752253537544143 8 0.6635471090937748 1.5971318248617374 9 0.5908184301896471 1.5998363457824305 >10 6.645039022581696 42.54685811888844 >50 0.1656955383575261 3.0579083553491935 >100 0.027794090305130952 1.5140787360300023 >500 0.0026725086831856687 0.5348726368598818 >1k 0.004810515629734204 3.495970009830719 >5k 0.0 0.0 >10k+ 0.0016035052099114013 6.692501399747698 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG 14606 2.356064858726441 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC 14468 2.3338043527354615 No Hit GAATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC 12542 2.0231251169483104 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4875 0.7863765703335204 No Hit GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 3382 0.545543704793429 No Hit GAACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT 2721 0.43891910725692496 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCT 2717 0.4382738751992154 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTC 2307 0.372137589283986 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTA 1779 0.28696695766632474 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC 1394 0.22486337211177998 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG 1292 0.20840995464018633 No Hit GAATCTATCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC 1272 0.20518379435163855 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTT 934 0.15066168547518116 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 754 0.12162624287825115 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08452539955995174 0.0 2 0.0 0.0 0.0 0.8449313795706626 0.0 3 1.6130801442738882E-4 0.0 0.0 0.98655981623791 0.0 4 1.6130801442738882E-4 0.0 0.0 1.6140479923604525 0.0 5 1.6130801442738882E-4 0.0 0.0 4.196266687314092 0.0 6 1.6130801442738882E-4 0.0 0.0 4.65793022460528 0.0 7 1.6130801442738882E-4 0.0 0.0 5.370105108302201 0.0 8 1.6130801442738882E-4 0.0 0.0 6.211810327584316 0.0 9 1.6130801442738882E-4 0.0 0.0 6.376667118329107 0.0 10 1.6130801442738882E-4 0.0 0.0 9.410548253679435 0.0 11 1.6130801442738882E-4 0.0 0.0 9.907376938115794 0.0 12 1.6130801442738882E-4 0.0 0.0 13.06498132053193 0.0 13 1.6130801442738882E-4 0.0 0.0 13.350173890039553 0.0 14 1.6130801442738882E-4 0.0 0.0 13.521483001361439 0.0 15 1.6130801442738882E-4 0.0 0.0 13.998793416052083 0.0 16 3.2261602885477763E-4 0.0 0.0 14.378028557970874 0.0 17 3.2261602885477763E-4 0.0 0.0 14.732099649638993 0.0 18 3.2261602885477763E-4 0.0 0.0 15.093913525999625 0.0 19 3.2261602885477763E-4 0.0 0.0 15.441209681061794 0.0 20 3.2261602885477763E-4 0.0 0.0 15.69656026790035 0.0 21 3.2261602885477763E-4 0.0 0.0 15.960782795532413 0.0 22 3.2261602885477763E-4 0.0 0.0 16.28839937283444 0.0 23 3.2261602885477763E-4 0.0 0.0 16.56504261757741 0.0 24 3.2261602885477763E-4 0.0 0.0 16.794745230122015 0.0 25 3.2261602885477763E-4 0.0 0.0 17.014608053786546 0.0 26 3.2261602885477763E-4 0.0 0.0 17.23301910532123 0.0 27 3.2261602885477763E-4 0.0 0.0 17.490305388332914 0.0 28 3.2261602885477763E-4 0.0 0.0 17.719362768819806 0.0 29 3.2261602885477763E-4 0.0 0.0 17.950355845479827 0.0 30 3.2261602885477763E-4 0.0 0.0 18.223772929934253 0.0 31 3.2261602885477763E-4 0.0 0.0 18.45928263099824 0.0 32 3.2261602885477763E-4 0.0 0.0 18.707213049173134 0.0 33 3.2261602885477763E-4 0.0 0.0 18.962402327997264 0.0 34 3.2261602885477763E-4 0.0 0.0 19.205816121768194 0.0 35 3.2261602885477763E-4 0.0 0.0 19.48713729892956 0.0 36 3.2261602885477763E-4 0.0 0.0 19.733777252989036 0.0 37 3.2261602885477763E-4 0.0 0.0 20.000742016866365 0.0 38 3.2261602885477763E-4 0.0 0.0 20.299807075614744 0.0 39 3.2261602885477763E-4 0.0 0.0 20.658556099701258 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTGTA 20 7.0307683E-4 45.000004 24 CCTCGTG 20 7.0307683E-4 45.000004 17 ATACGGA 20 7.0307683E-4 45.000004 28 CGGTCTA 35 1.2107193E-7 45.0 31 TTGTACG 30 2.163877E-6 44.999996 1 TATAGCG 30 2.163877E-6 44.999996 1 TACGGCT 1615 0.0 43.46749 7 CGTTTTT 2690 0.0 42.99257 1 TGATACC 1540 0.0 42.66234 4 CGATGAA 450 0.0 42.0 19 GATACCT 1565 0.0 41.98083 5 ACGGCTG 1855 0.0 41.603775 8 ACAACGA 105 0.0 40.714287 13 TTAGCGG 105 0.0 40.714287 2 CACAACG 105 0.0 40.714287 12 CGGCTGT 1895 0.0 40.369392 9 ATACCTG 1645 0.0 40.07599 6 ACCACCG 800 0.0 39.65625 14 CTACGAA 125 0.0 39.600002 11 CGGTAGT 205 0.0 39.512196 12 >>END_MODULE