SRR2936662.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936662.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	325319
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3005	0.9237087289706412	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGC	2655	0.8161220217694017	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCG	2552	0.784460790793037	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	2485	0.7638656211287997	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	1174	0.3608765550121573	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT	874	0.26865937741109497	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT	535	0.1644539667218945	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	518	0.15922832665783432	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	446	0.13709620403357933	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTC	439	0.13494446988955455	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	418	0.1284892674574802	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTA	408	0.12541536153744479	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGAGCG	55	1.8189894E-12	45.000004	1
CGGCGCT	20	7.0258224E-4	45.0	9
CTCACGA	20	7.0258224E-4	45.0	24
GATCGTT	20	7.0258224E-4	45.0	9
CTCGTAT	20	7.0258224E-4	45.0	12
CGAAACT	25	3.8846203E-5	45.0	13
CGACGGT	20	7.0258224E-4	45.0	28
GCGCGAT	20	7.0258224E-4	45.0	37
ATTACAC	20	7.0258224E-4	45.0	29
TTGTCGG	20	7.0258224E-4	45.0	2
GGATCGA	20	7.0258224E-4	45.0	9
GGATATC	40	6.7884685E-9	45.0	8
CACGACC	25	3.8846203E-5	45.0	27
GCGTTTG	20	7.0258224E-4	45.0	1
CCCACTA	20	7.0258224E-4	45.0	13
ATCGTTG	20	7.0258224E-4	45.0	10
TACATTG	25	3.8846203E-5	45.0	27
AAGCACG	25	3.8846203E-5	45.0	1
TCTCGCG	20	7.0258224E-4	45.0	32
TCAGACG	35	1.2083365E-7	45.0	22