SRR2936661.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936661.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	417660
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTC	3732	0.8935497773308434	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCG	3697	0.8851697553033567	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGC	3301	0.7903557917923669	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3029	0.7252310491787578	No Hit
GCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	1058	0.25331609443087677	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTT	1032	0.24709093521045827	No Hit
GAACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCT	930	0.2226691567303548	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCT	682	0.16329071493559355	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTC	587	0.1405449408609874	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	35	1.209446E-7	45.0	25
CTCACGA	35	1.209446E-7	45.0	24
GAATCGA	20	7.028124E-4	45.0	21
TAGTTCG	20	7.028124E-4	45.0	1
TAACCGG	20	7.028124E-4	45.0	2
AAGTTCG	20	7.028124E-4	45.0	27
GACGGTC	35	1.209446E-7	45.0	29
CGCGTAA	20	7.028124E-4	45.0	12
CGTTTTA	100	0.0	45.0	1
ACGGTCT	35	1.209446E-7	45.0	30
CGTTTTT	1535	0.0	42.654724	1
CGAATAT	60	3.6379788E-12	41.250004	14
TATGCGG	45	1.9232175E-8	40.0	2
ACGGGTA	45	1.9232175E-8	40.0	5
CGGGCAT	85	0.0	39.705883	6
CGACGGT	40	3.4511686E-7	39.375	28
AACGAGC	40	3.4511686E-7	39.375	15
TCTCACG	40	3.4511686E-7	39.375	23
AGTACGG	40	3.4511686E-7	39.375	2
TACGGCT	435	0.0	38.793102	7