SRR2936660.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936660.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	363705
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG	8286	2.2782199859776466	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC	7498	2.0615608803838272	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	6855	1.8847692498040993	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2667	0.7332865921557307	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	2033	0.5589694945079117	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCT	1585	0.43579274411954744	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT	1175	0.32306402166591053	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTC	1174	0.32278907356236514	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTT	899	0.24717834508736475	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTA	895	0.24607855267318293	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG	842	0.2315063031852738	No Hit
GAATCTATCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	818	0.22490754870018284	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC	758	0.2084106624874555	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTCTGTT	364	0.1000811096905459	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTTCGC	30	2.1613941E-6	45.000004	11
GGTACCC	20	7.02692E-4	45.0	31
TTGTGCG	35	1.208864E-7	45.0	1
TTCACGG	20	7.02692E-4	45.0	2
TACGGGT	35	1.208864E-7	45.0	4
CTATTCG	20	7.02692E-4	45.0	37
ATCGGGC	20	7.02692E-4	45.0	38
ATACGGT	20	7.02692E-4	45.0	28
CACCCGT	20	7.02692E-4	45.0	16
CTAGCGG	20	7.02692E-4	45.0	2
CGTTTTT	1435	0.0	42.96167	1
ACAACGA	85	0.0	42.35294	13
CGATGAA	240	0.0	42.187504	19
TACGGCT	805	0.0	41.366463	7
AGCTACG	60	3.6379788E-12	41.250004	9
ACGGCTG	950	0.0	41.21053	8
CGGCTGT	945	0.0	40.952377	9
CACCGAT	255	0.0	40.588234	16
TGATACC	910	0.0	40.549454	4
GATACCT	925	0.0	39.89189	5