##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936660.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 363705 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.079099819908993 31.0 31.0 33.0 28.0 34.0 2 31.10906091475234 31.0 31.0 34.0 28.0 34.0 3 30.861615870004538 31.0 30.0 34.0 27.0 34.0 4 34.84302387924279 35.0 35.0 37.0 32.0 37.0 5 35.05963624365901 35.0 35.0 37.0 33.0 37.0 6 35.0149984190484 35.0 35.0 37.0 32.0 37.0 7 30.955890075748204 35.0 35.0 37.0 0.0 37.0 8 32.84699962882006 35.0 33.0 37.0 17.0 37.0 9 35.89004550391114 38.0 34.0 39.0 32.0 39.0 10 35.93088079624971 37.0 35.0 39.0 32.0 39.0 11 36.21761042603209 37.0 35.0 39.0 32.0 39.0 12 36.275473254423225 37.0 35.0 39.0 32.0 39.0 13 36.03734895038561 38.0 35.0 39.0 31.0 39.0 14 37.10709228633095 39.0 36.0 40.0 31.0 41.0 15 37.16085838797927 39.0 36.0 40.0 31.0 41.0 16 37.347399678310715 39.0 36.0 40.0 32.0 41.0 17 37.07184393945643 39.0 35.0 40.0 31.0 41.0 18 36.99679960407473 39.0 35.0 40.0 31.0 41.0 19 36.75360525700774 38.0 35.0 40.0 31.0 41.0 20 36.57791616832323 38.0 35.0 40.0 30.0 41.0 21 36.80750608322679 39.0 35.0 40.0 31.0 41.0 22 36.85372210995175 39.0 35.0 40.0 31.0 41.0 23 36.95137542788799 39.0 35.0 40.0 32.0 41.0 24 36.84891326762074 39.0 35.0 40.0 31.0 41.0 25 36.65143454173025 38.0 35.0 40.0 31.0 41.0 26 36.50013060034918 38.0 35.0 40.0 31.0 41.0 27 36.55300861962304 38.0 35.0 40.0 31.0 41.0 28 36.48631720762706 38.0 35.0 40.0 31.0 41.0 29 36.390747996315696 38.0 35.0 40.0 30.0 41.0 30 36.246614701475096 38.0 35.0 40.0 30.0 41.0 31 36.296281326899546 38.0 35.0 40.0 30.0 41.0 32 36.04682916099586 38.0 35.0 40.0 30.0 41.0 33 35.80917776769635 38.0 35.0 40.0 29.0 41.0 34 35.64944391746058 38.0 35.0 40.0 27.0 41.0 35 35.58651104604006 38.0 35.0 40.0 27.0 41.0 36 35.464274618165824 38.0 35.0 40.0 26.0 41.0 37 35.44209180517177 38.0 35.0 40.0 26.0 41.0 38 35.35885401630442 38.0 35.0 40.0 26.0 41.0 39 35.247722742332385 38.0 35.0 40.0 25.0 41.0 40 35.10371867310045 38.0 34.0 40.0 24.0 41.0 41 34.8619073149943 38.0 34.0 40.0 24.0 41.0 42 34.93976161999423 38.0 34.0 40.0 24.0 41.0 43 34.91078758884261 38.0 34.0 40.0 24.0 41.0 44 34.79176530429881 38.0 34.0 40.0 23.0 41.0 45 34.710768342475355 38.0 34.0 40.0 23.0 41.0 46 34.641607896509534 38.0 34.0 40.0 23.0 41.0 47 34.551738359384665 37.0 34.0 40.0 23.0 41.0 48 34.46980107504709 37.0 34.0 40.0 23.0 41.0 49 34.4028072201372 37.0 33.0 40.0 23.0 41.0 50 34.196167223436575 37.0 33.0 40.0 23.0 41.0 51 32.482701640065436 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 13.0 9 17.0 10 33.0 11 13.0 12 18.0 13 15.0 14 17.0 15 28.0 16 55.0 17 111.0 18 250.0 19 585.0 20 1011.0 21 1473.0 22 2059.0 23 2811.0 24 3482.0 25 4481.0 26 5662.0 27 6204.0 28 6569.0 29 7220.0 30 8804.0 31 11247.0 32 14843.0 33 20578.0 34 29276.0 35 32174.0 36 36348.0 37 51619.0 38 65771.0 39 50916.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.65674104012868 17.068503319998353 19.362670295981633 14.91208534389134 2 32.01743170976478 31.22063210569005 21.35301961754719 15.408916566997979 3 29.278673650348498 30.91873908799714 25.614715222501754 14.18787203915261 4 25.167649606136845 22.6197055305811 35.236249157971436 16.976395705310622 5 29.802999683809684 25.832199172406206 25.441222969164567 18.92357817461954 6 23.119286234723198 37.54333869482135 26.969934424877305 12.367440645578148 7 61.4038850167031 17.10479646966635 17.640945271579987 3.850373242050563 8 69.51595386370822 12.244538843293329 13.233802119849877 5.005705173148568 9 64.72168378218612 7.086237472677031 14.096864216879066 14.09521452825779 10 39.21694780110254 22.55261819331601 22.145969948172283 16.084464057409164 11 31.6171072710026 23.390934961026105 27.134078442693944 17.857879325277352 12 26.676014902187212 21.175953038863916 30.90389189040569 21.244140168543186 13 23.944130545359563 23.235039386315833 36.31349582766253 16.507334240662075 14 20.950770542060187 28.910243191597583 29.729038643955953 20.409947622386273 15 17.87987517356099 23.63563877318156 39.91339134738318 18.571094705874266 16 21.73107325992219 25.01587825297975 29.728763695852408 23.524284791245652 17 22.72940982389574 23.952378988465927 31.71856312121087 21.599648066427463 18 22.93809543448674 23.991971515376473 31.631679520490508 21.43825352964628 19 22.38737438308519 26.247920704966937 28.78706644120922 22.57763847073865 20 23.50393863158329 26.32325648533839 32.81945532780688 17.353349555271443 21 22.862209757908193 29.162920498755863 30.394413054535956 17.580456688799988 22 21.398935950839277 22.202609257502644 32.07709544823415 24.32135934342393 23 20.274948103545455 28.70485695824913 31.239053628627595 19.78114130957782 24 22.262822892179102 24.534444123671655 29.504680991462862 23.69805199268638 25 20.235080628531364 31.091131548920142 28.359797088299583 20.31399073424891 26 19.76464442336509 25.290826356525205 30.79061327174496 24.153915948364745 27 23.250711428217922 26.663917185631213 27.960847390055125 22.12452399609574 28 18.360209510454904 25.18772081769566 33.690765867942424 22.761303803907012 29 22.072558804525645 26.371647351562395 29.76395705310623 21.791836790805736 30 23.282605408229195 26.475027838495485 30.428231671272048 19.814135082003272 31 24.02001622193811 23.71922299665938 27.806326555862583 24.454434225539927 32 25.38678324466257 26.523693652823027 28.81923536932404 19.27028773319036 33 22.226804690614646 22.860835017390468 27.617987104933945 27.294373187060945 34 21.790736998391555 26.32710575878803 31.302291692443053 20.579865550377367 35 25.549277573857935 24.067582243851472 28.212149956695676 22.17099022559492 36 23.04147592141983 27.1398523528684 27.781306278439942 22.037365447271828 37 23.072545057120468 24.659820458888383 32.632490617395966 19.635143866595183 38 21.42065685101937 25.519583178675028 25.735142491854663 27.32461747845094 39 22.215256870265737 23.71702341183102 32.6641096493037 21.40361006859955 40 25.159951059237567 23.125884989208288 28.7125555051484 23.00160844640574 41 19.875998405300997 25.214115835636026 31.12742469858814 23.782461060474837 42 23.462421467947927 23.629864863007107 31.717188380693145 21.190525288351825 43 23.082718136951648 23.173451011121653 29.881359893320138 23.862470958606565 44 22.516050095544465 23.33209606686738 30.665236936528228 23.486616901059925 45 20.740435242847912 23.65516008853329 28.67516256306622 26.929242105552575 46 25.304023865495388 25.78958221635666 27.392254711923126 21.514139206224826 47 19.560357982430816 24.081879545235836 35.1683369763957 21.18942549593764 48 22.686242971639103 25.511334735568663 27.899259014860945 23.90316327793129 49 21.447051868959736 22.376651407046918 33.20025845121734 22.976038272776016 50 21.903190772741645 23.620791575590108 30.28718329415323 24.188834357515017 51 21.655187583343643 23.90371317413838 27.065616364911122 27.37548287760685 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 85.0 1 301.0 2 517.0 3 2717.0 4 4917.0 5 3450.5 6 1984.0 7 1859.5 8 1735.0 9 1714.5 10 1694.0 11 1667.0 12 1640.0 13 1638.5 14 1637.0 15 1583.5 16 1530.0 17 1560.5 18 1591.0 19 1558.5 20 1526.0 21 1458.5 22 1391.0 23 1620.5 24 1850.0 25 1930.5 26 2394.5 27 2778.0 28 3241.0 29 3704.0 30 4580.5 31 5457.0 32 5958.0 33 6459.0 34 7832.5 35 9206.0 36 9876.5 37 10547.0 38 11631.5 39 12716.0 40 14258.0 41 15800.0 42 17416.5 43 19033.0 44 21587.0 45 24141.0 46 40628.0 47 57115.0 48 43192.5 49 29270.0 50 28701.0 51 28132.0 52 25453.0 53 22774.0 54 21621.0 55 20468.0 56 18626.0 57 16784.0 58 15303.5 59 13823.0 60 12769.0 61 11715.0 62 10531.0 63 9347.0 64 7929.0 65 6511.0 66 5558.0 67 4605.0 68 3871.5 69 3138.0 70 2699.0 71 2260.0 72 1890.0 73 1520.0 74 1262.5 75 822.0 76 639.0 77 488.5 78 338.0 79 241.5 80 145.0 81 116.0 82 87.0 83 57.0 84 27.0 85 20.0 86 13.0 87 14.0 88 15.0 89 12.5 90 10.0 91 12.0 92 14.0 93 7.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 363705.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.54522782387757 #Duplication Level Percentage of deduplicated Percentage of total 1 75.17224221066698 25.968422331991963 2 8.119876226193954 5.610059482711147 3 3.638899665569481 3.771198539259888 4 2.1732579845287594 3.0030276878242788 5 1.469434289079629 2.5380971144236675 6 1.1076074658721746 2.2957531348789186 7 0.8082265201577026 1.9544258490503328 8 0.7270383529771449 2.009256443223375 9 0.6443008375258578 2.0031767297501295 >10 6.05877819415078 38.79517174784311 >50 0.05329369276827939 1.1947543153577402 >100 0.01670399325572936 1.1059995674597298 >500 0.0039771412513641335 1.157383895190157 >1k 0.0039771412513641335 2.372472115639082 >5k 0.00238628475081848 6.220801045396477 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG 8286 2.2782199859776466 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC 7498 2.0615608803838272 No Hit GAATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC 6855 1.8847692498040993 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2667 0.7332865921557307 No Hit GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC 2033 0.5589694945079117 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCT 1585 0.43579274411954744 No Hit GAACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT 1175 0.32306402166591053 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTC 1174 0.32278907356236514 No Hit GAATGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTT 899 0.24717834508736475 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTA 895 0.24607855267318293 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG 842 0.2315063031852738 No Hit GAATCTATCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC 818 0.22490754870018284 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC 758 0.2084106624874555 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTCTGTT 364 0.1000811096905459 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08853328934163676 0.0 2 0.0 0.0 0.0 0.8982554542830041 0.0 3 0.0 0.0 0.0 1.0439779491620957 0.0 4 0.0 0.0 0.0 1.5630799686559163 0.0 5 0.0 0.0 0.0 4.012042726935291 0.0 6 0.0 0.0 0.0 4.5847596266204755 0.0 7 0.0 0.0 0.0 5.313372101015934 0.0 8 0.0 0.0 0.0 6.1563629864863 0.0 9 0.0 0.0 0.0 6.352950880521302 0.0 10 0.0 0.0 0.0 9.360883133308588 0.0 11 0.0 0.0 0.0 9.9470724900675 0.0 12 0.0 0.0 0.0 12.79745947952324 0.0 13 0.0 0.0 0.0 13.122448137913969 0.0 14 0.0 0.0 0.0 13.307213263496514 0.0 15 0.0 0.0 0.0 13.760602686242972 0.0 16 0.0 0.0 0.0 14.167525879490245 0.0 17 0.0 0.0 0.0 14.58902132222543 0.0 18 0.0 0.0 0.0 15.052583824803069 0.0 19 2.749481035454558E-4 0.0 0.0 15.432287155799344 0.0 20 2.749481035454558E-4 0.0 0.0 15.716308546761798 0.0 21 2.749481035454558E-4 0.0 0.0 16.036073191185164 0.0 22 2.749481035454558E-4 0.0 0.0 16.378933476306347 0.0 23 2.749481035454558E-4 0.0 0.0 16.697873276419077 0.0 24 2.749481035454558E-4 0.0 0.0 16.960723663408533 0.0 25 2.749481035454558E-4 0.0 0.0 17.199103669182442 0.0 26 2.749481035454558E-4 0.0 0.0 17.42731059512517 0.0 27 2.749481035454558E-4 0.0 0.0 17.744875654720172 0.0 28 2.749481035454558E-4 0.0 0.0 17.99012936308272 0.0 29 2.749481035454558E-4 0.0 0.0 18.25820376403954 0.0 30 2.749481035454558E-4 0.0 0.0 18.56834522483881 0.0 31 2.749481035454558E-4 0.0 0.0 18.82377201303254 0.0 32 2.749481035454558E-4 0.0 0.0 19.086897348125543 0.0 33 2.749481035454558E-4 0.0 0.0 19.362120399774543 0.0 34 2.749481035454558E-4 0.0 0.0 19.647516531254727 0.0 35 2.749481035454558E-4 0.0 0.0 19.924664219628546 0.0 36 2.749481035454558E-4 0.0 0.0 20.173492253337184 0.0 37 2.749481035454558E-4 0.0 0.0 20.453114474642913 0.0 38 2.749481035454558E-4 0.0 0.0 20.77095448234146 0.0 39 2.749481035454558E-4 0.0 0.0 21.19794888714755 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGTTCGC 30 2.1613941E-6 45.000004 11 GGTACCC 20 7.02692E-4 45.0 31 TTGTGCG 35 1.208864E-7 45.0 1 TTCACGG 20 7.02692E-4 45.0 2 TACGGGT 35 1.208864E-7 45.0 4 CTATTCG 20 7.02692E-4 45.0 37 ATCGGGC 20 7.02692E-4 45.0 38 ATACGGT 20 7.02692E-4 45.0 28 CACCCGT 20 7.02692E-4 45.0 16 CTAGCGG 20 7.02692E-4 45.0 2 CGTTTTT 1435 0.0 42.96167 1 ACAACGA 85 0.0 42.35294 13 CGATGAA 240 0.0 42.187504 19 TACGGCT 805 0.0 41.366463 7 AGCTACG 60 3.6379788E-12 41.250004 9 ACGGCTG 950 0.0 41.21053 8 CGGCTGT 945 0.0 40.952377 9 CACCGAT 255 0.0 40.588234 16 TGATACC 910 0.0 40.549454 4 GATACCT 925 0.0 39.89189 5 >>END_MODULE