SRR2936657.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936657.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	212783
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3119	1.4658125884116682	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG	908	0.42672581926187714	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC	828	0.38912883078065447	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	822	0.3863090566445628	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	482	0.2265218555993665	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	482	0.2265218555993665	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	480	0.2255819308873359	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	304	0.14286855622864608	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	264	0.12407006198803475	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	260	0.12219021256397362	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	245	0.11514077722374438	No Hit
CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGCT	222	0.10433164303539286	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAT	20	7.020316E-4	45.000004	16
CGGAACG	20	7.020316E-4	45.000004	42
ATTAGCG	20	7.020316E-4	45.000004	13
CGCGGAA	20	7.020316E-4	45.000004	40
TTAGCGT	20	7.020316E-4	45.000004	14
GCGCGCC	20	7.020316E-4	45.000004	16
CCGTGGT	20	7.020316E-4	45.000004	38
ATTAACG	20	7.020316E-4	45.000004	1
CACGACC	30	2.1571395E-6	45.000004	27
TCGATTT	20	7.020316E-4	45.000004	15
GAATAAC	20	7.020316E-4	45.000004	9
TAACGCC	20	7.020316E-4	45.000004	12
ACGGGTC	30	2.1571395E-6	45.000004	5
GACCCAC	20	7.020316E-4	45.000004	12
AGAACCG	20	7.020316E-4	45.000004	2
ACGATGG	30	2.1571395E-6	45.000004	2
ACGATCT	20	7.020316E-4	45.000004	16
CCATCGA	20	7.020316E-4	45.000004	31
CGTAGGT	30	2.1571395E-6	45.000004	3
AGACCTA	20	7.020316E-4	45.000004	32