SRR2936655.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936655.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	229283
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3574	1.5587723468377506	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGC	986	0.43003624341970403	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCG	826	0.3602534858668109	No Hit
GCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC	807	0.35196678340740484	TruSeq Adapter, Index 13 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTC	677	0.29526829289567913	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	445	0.1940832944439841	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	351	0.15308592438165936	No Hit
CCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC	291	0.12691739029932442	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGCT	290	0.12648124806461883	TruSeq Adapter, Index 19 (95% over 22bp)
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	255	0.11121626984992347	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.021461E-4	45.000004	1
ACTATAT	20	7.021461E-4	45.000004	40
CACGGGC	20	7.021461E-4	45.000004	4
CCTAGGA	20	7.021461E-4	45.000004	4
GACCGAT	40	6.7739165E-9	45.000004	9
TCGATGG	20	7.021461E-4	45.000004	2
ATATCGG	35	1.2062446E-7	45.000004	9
CTAACGG	20	7.021461E-4	45.000004	2
CGGATAC	20	7.021461E-4	45.000004	14
TCACTAA	20	7.021461E-4	45.000004	11
GGCATGT	20	7.021461E-4	45.000004	8
GCGGATA	20	7.021461E-4	45.000004	13
GTAAGTT	20	7.021461E-4	45.000004	10
TACCGAG	20	7.021461E-4	45.000004	1
AAGTCCG	20	7.021461E-4	45.000004	30
AACACGT	20	7.021461E-4	45.000004	41
GCGAGAC	25	3.8810074E-5	45.0	21
ACACGAC	25	3.8810074E-5	45.0	26
ATGGACG	25	3.8810074E-5	45.0	21
TGGGTAC	50	2.1827873E-11	45.0	6