SRR2936648.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936648.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	648387
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2115	0.3261940785364296	No Hit
GCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC	1183	0.1824527635501637	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGCT	25	3.888917E-5	45.000004	26
TATTACG	25	3.888917E-5	45.000004	1
CCGGATA	20	7.031009E-4	45.0	5
TCGGCGA	20	7.031009E-4	45.0	1
CCGTATG	20	7.031009E-4	45.0	45
CCATACG	20	7.031009E-4	45.0	2
GTCCGCG	20	7.031009E-4	45.0	1
ATCGCGT	20	7.031009E-4	45.0	20
CGACGGT	30	2.1640335E-6	44.999996	28
TTAAGCG	30	2.1640335E-6	44.999996	1
GCTTACG	55	6.002665E-11	40.909092	1
TACGGGA	140	0.0	40.17857	4
CGTTTTT	1180	0.0	39.47034	1
ACGATAG	40	3.4551158E-7	39.375	1
AATACGG	40	3.4551158E-7	39.375	2
ACGGGAG	295	0.0	38.898304	5
TCGGGCA	35	6.2440777E-6	38.571426	5
TACGCGG	35	6.2440777E-6	38.571426	2
AGACACG	230	0.0	38.152172	24
CGAATAT	65	9.094947E-12	38.07692	14