SRR2936645.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936645.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	174380
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2510	1.4393852506021332	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC	1784	1.0230531024200022	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCG	1690	0.9691478380548229	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTC	1122	0.6434224108269296	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	767	0.4398440188094965	RNA PCR Primer, Index 35 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	415	0.23798600756967542	RNA PCR Primer, Index 10 (95% over 23bp)
ACTGATGGGGTTTTATTATTAGTAATATTAAATACTTATTTTGCTTCTAAT	316	0.18121344190847574	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCT	301	0.17261153802041518	No Hit
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT	267	0.15311388920747793	TruSeq Adapter, Index 10 (95% over 24bp)
GAACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCT	228	0.13074893909852048	RNA PCR Primer, Index 35 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTC	215	0.123293955728868	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTA	210	0.1204266544328478	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	175	0.10035554536070651	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGGA	20	7.0168154E-4	45.0	4
ACTATAC	20	7.0168154E-4	45.0	41
ATCTCAG	20	7.0168154E-4	45.0	33
GCGACCG	20	7.0168154E-4	45.0	19
CTGTACT	20	7.0168154E-4	45.0	24
CCAGGGT	20	7.0168154E-4	45.0	4
CACGCCG	20	7.0168154E-4	45.0	26
ACACAAT	20	7.0168154E-4	45.0	35
TTGTACG	20	7.0168154E-4	45.0	1
TACGGGT	35	1.2040073E-7	45.0	4
TACGGGA	40	6.7575456E-9	45.0	4
TGAAACG	35	1.2040073E-7	45.0	4
AGGCGAT	20	7.0168154E-4	45.0	7
TAACGAG	20	7.0168154E-4	45.0	23
TCGATGG	20	7.0168154E-4	45.0	2
ATCGTGA	20	7.0168154E-4	45.0	30
ATCCGTA	20	7.0168154E-4	45.0	44
AGGCCAC	20	7.0168154E-4	45.0	19
CTAGTAG	20	7.0168154E-4	45.0	13
CGAGGAC	20	7.0168154E-4	45.0	26