SRR2936643.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936643.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1031091
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5868	0.5691059276048379	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	2673	0.2592399700899339	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCG	2485	0.24100685584492543	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGC	2390	0.2317933140721818	No Hit
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	1332	0.1291835541188896	TruSeq Adapter, Index 14 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTAACG	20	7.032947E-4	45.000004	23
TTACGCG	20	7.032947E-4	45.000004	1
ATCGACG	20	7.032947E-4	45.000004	1
ACGCATT	50	2.1827873E-11	45.0	39
CTAACGC	50	2.1827873E-11	45.0	36
CGTTTTT	3510	0.0	41.474358	1
CCCGCAC	230	0.0	41.08696	33
CGTTTTA	165	0.0	39.545452	1
TCAAGCG	185	0.0	38.918922	17
CTATGCG	35	6.247663E-6	38.571426	1
TCAATCG	35	6.247663E-6	38.571426	8
TATCGCG	35	6.247663E-6	38.571426	1
CACGTGA	170	0.0	38.38235	43
TTAAGCG	65	9.094947E-12	38.076927	1
TATGCGG	95	0.0	37.894737	2
GTTACGG	95	0.0	37.894737	2
TACGGTT	60	1.546141E-10	37.500004	33
CCGCACT	255	0.0	37.058823	34
TACGGCT	250	0.0	36.899998	7
TAGTGCG	55	2.748493E-9	36.81818	1