SRR2936642.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936642.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	719570
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	4826	0.6706783217755048	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGC	4497	0.6249565712856289	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCG	4339	0.6029990132996095	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2732	0.37967119251775366	No Hit
GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	2224	0.3090734744361216	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT	1870	0.25987742679655906	No Hit
GAACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT	940	0.13063357282821686	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCT	891	0.12382395041483107	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTC	780	0.1083980710702225	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCGACG	35	1.2110831E-7	45.000004	1
TCCGAAC	20	7.031526E-4	45.0	35
CGACCCT	20	7.031526E-4	45.0	12
CCCGTCG	20	7.031526E-4	45.0	15
TCGCTCG	20	7.031526E-4	45.0	13
GTCGTAG	25	3.889347E-5	45.0	1
GTCGTAC	20	7.031526E-4	45.0	22
TTACGCG	20	7.031526E-4	45.0	1
GACGATA	20	7.031526E-4	45.0	9
GCTCGAC	20	7.031526E-4	45.0	16
TCGCGCC	20	7.031526E-4	45.0	17
TCGACGG	75	0.0	42.0	2
ATAGCGG	55	6.002665E-11	40.909092	2
ACGGGTA	75	0.0	39.0	5
TACGGCT	630	0.0	38.928574	7
CGTTTTT	1410	0.0	38.617023	1
ATGGGCG	205	0.0	38.41463	5
ACGGCTG	690	0.0	38.152176	8
CGTATGG	65	9.094947E-12	38.076927	2
AGGACGT	30	1.13949754E-4	37.500004	5