SRR2936641.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936641.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	336303
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6188	1.8400073743023406	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	938	0.2789151449734317	TruSeq Adapter, Index 13 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	874	0.2598846873206602	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGCT	514	0.15283836302382078	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	427	0.12696883465208458	No Hit
TCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	347	0.10318076258612026	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTGCGG	45	3.8380676E-10	45.000004	2
AGCGTTG	20	7.026163E-4	45.0	1
TTTAGCG	20	7.026163E-4	45.0	1
ATCCTAC	25	3.8849008E-5	45.0	13
ACTATGC	20	7.026163E-4	45.0	17
GATACGC	20	7.026163E-4	45.0	35
GCGACGT	20	7.026163E-4	45.0	17
AATCACG	25	3.8849008E-5	45.0	45
TTGTGCG	20	7.026163E-4	45.0	1
CGACGTT	20	7.026163E-4	45.0	27
CGACGTC	20	7.026163E-4	45.0	18
CGCGGGT	50	2.1827873E-11	45.0	4
GCGAACG	20	7.026163E-4	45.0	1
AACCCCG	25	3.8849008E-5	45.0	10
TTTCGCG	25	3.8849008E-5	45.0	1
TTTCGAC	20	7.026163E-4	45.0	24
GCCGGTC	20	7.026163E-4	45.0	21
TTACTAG	20	7.026163E-4	45.0	1
AGGCGAT	55	1.8189894E-12	45.0	7
ATGTCGG	20	7.026163E-4	45.0	2