##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936641.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 336303 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.04707659461854 31.0 31.0 33.0 28.0 34.0 2 31.101048756627208 31.0 31.0 34.0 28.0 34.0 3 30.75879192276013 31.0 30.0 34.0 27.0 34.0 4 34.70528362815675 35.0 35.0 37.0 32.0 37.0 5 35.064016675438516 35.0 35.0 37.0 33.0 37.0 6 35.07777212811066 35.0 35.0 37.0 32.0 37.0 7 30.909804551252886 35.0 35.0 37.0 0.0 37.0 8 33.08529510590152 36.0 35.0 37.0 17.0 37.0 9 36.45035578035284 39.0 35.0 39.0 32.0 39.0 10 36.07777212811066 37.0 35.0 39.0 32.0 39.0 11 36.37616673059711 37.0 35.0 39.0 32.0 39.0 12 36.46395958406556 38.0 35.0 39.0 32.0 39.0 13 36.40550931749048 39.0 35.0 39.0 32.0 39.0 14 37.41470340734397 39.0 36.0 41.0 32.0 41.0 15 37.645260375316305 39.0 36.0 41.0 33.0 41.0 16 37.56950428631323 39.0 36.0 41.0 33.0 41.0 17 37.492198999116866 39.0 36.0 40.0 32.0 41.0 18 37.35906310678168 39.0 36.0 40.0 32.0 41.0 19 37.06994287889195 38.0 36.0 40.0 32.0 41.0 20 36.956473775137304 39.0 35.0 40.0 32.0 41.0 21 36.92548683776238 38.0 35.0 40.0 32.0 41.0 22 37.0064554880569 39.0 35.0 40.0 32.0 41.0 23 37.03660984290952 39.0 35.0 40.0 32.0 41.0 24 36.93509127185901 38.0 35.0 40.0 32.0 41.0 25 36.63284894871589 38.0 35.0 40.0 31.0 41.0 26 36.62392247467314 38.0 35.0 40.0 31.0 41.0 27 36.60478199718706 38.0 35.0 40.0 31.0 41.0 28 36.62845112889269 38.0 35.0 40.0 31.0 41.0 29 36.622236495065465 38.0 35.0 40.0 31.0 41.0 30 36.30785333464168 38.0 35.0 40.0 30.0 41.0 31 36.18195496323256 38.0 35.0 40.0 30.0 41.0 32 35.909260399104376 38.0 35.0 40.0 30.0 41.0 33 35.63239400183763 38.0 35.0 40.0 27.0 41.0 34 35.42615736404373 38.0 35.0 40.0 26.0 41.0 35 35.231823682809846 38.0 34.0 40.0 25.0 41.0 36 35.061221576970766 38.0 34.0 40.0 24.0 41.0 37 34.92839492957244 38.0 34.0 40.0 23.0 41.0 38 34.82813415283242 38.0 34.0 40.0 23.0 41.0 39 34.80913937728774 38.0 34.0 40.0 23.0 41.0 40 34.70577425714311 38.0 34.0 40.0 23.0 41.0 41 34.573432291713125 38.0 34.0 40.0 22.0 41.0 42 34.55870450159529 38.0 34.0 40.0 22.0 41.0 43 34.453216296018766 38.0 34.0 40.0 22.0 41.0 44 34.2013690035474 38.0 33.0 40.0 21.0 41.0 45 34.11912174437933 38.0 33.0 40.0 20.0 41.0 46 33.98156127063987 37.0 33.0 40.0 20.0 41.0 47 33.933024683098274 37.0 33.0 40.0 20.0 41.0 48 33.87578463468955 37.0 33.0 40.0 20.0 41.0 49 33.774530705940776 37.0 33.0 40.0 20.0 41.0 50 33.59922450885065 37.0 33.0 40.0 19.0 41.0 51 31.910794729752634 35.0 30.0 39.0 14.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 8.0 9 13.0 10 11.0 11 15.0 12 9.0 13 10.0 14 12.0 15 23.0 16 37.0 17 93.0 18 184.0 19 377.0 20 559.0 21 938.0 22 1480.0 23 2256.0 24 3315.0 25 5038.0 26 6671.0 27 7449.0 28 7654.0 29 7738.0 30 8820.0 31 10309.0 32 12822.0 33 17200.0 34 26465.0 35 29927.0 36 31974.0 37 46898.0 38 62079.0 39 45917.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.280107522085736 22.221032818618923 25.772294627166577 18.726565032128764 2 34.99760632524836 22.907913399523643 25.7047959726794 16.389684302548595 3 28.912320139873867 21.118158327460655 34.86587987618309 15.103641656482397 4 26.699732086838356 23.692325075898818 32.116870798060084 17.49107203920274 5 24.630467168000287 27.39612789656946 31.269420730710102 16.70398420472015 6 24.26442820908526 31.476971659485642 30.253670053493426 14.00493007793567 7 64.65122226087784 17.7860441328207 13.860417540134936 3.702316066166522 8 78.13073329705652 3.6095425851092613 14.09889296259623 4.160831155237984 9 72.98477860738679 5.694567101691034 16.350433983639753 4.970220307282421 10 37.00859046752482 23.293874868793914 24.86507702875086 14.832457634930405 11 27.970609836962502 26.426763959881416 29.575115297811795 16.02751090534429 12 25.864770757323008 22.846659113953784 33.39250616259742 17.896063966125787 13 21.34146885397989 24.66287841619016 36.148354311439384 17.847298418390558 14 17.661751456276036 28.27688126481179 35.19623672699916 18.865130551913005 15 16.89607288665281 24.517473825686956 41.13671302367211 17.44974026398813 16 18.817851758681904 23.908499180798266 39.025521627817774 18.24812743270206 17 18.549938597038977 23.77885418803876 34.2896138303851 23.381593384537158 18 19.987927553426523 24.763680371569684 36.669907791485656 18.578484283518137 19 22.162454691156487 25.16569878948448 34.20457147274928 18.467275046609753 20 23.54840723989973 25.65900393395242 33.2057697968796 17.58681902926825 21 20.85678688563587 25.71996086862145 34.43561312268996 18.987639123052723 22 19.6376481922552 23.596875436734134 34.147777450691784 22.61769892031888 23 19.012021896920338 24.95606640440317 34.999093079752484 21.032818618924008 24 19.501758830578378 23.84129787721192 36.33063041364484 20.326312878564863 25 18.7185365578065 24.833557833263455 34.706797144241946 21.741108464688093 26 18.83539546183055 26.890928716068547 34.91702423112491 19.356651590975996 27 19.688495196296195 25.822844280306747 35.65772532507887 18.830935198318183 28 16.427745217854138 26.187396484717652 38.07340404337755 19.311454254050663 29 20.298361893887357 23.946560096103813 36.5239084991808 19.231169510828032 30 20.389648620440497 24.324790441952644 36.17868410332349 19.10687683428337 31 21.270104637782 25.4686993574247 32.63336931279233 20.627826692000966 32 22.241847381676642 25.8356303690422 32.00506685935005 19.917455389931106 33 21.09496495719634 24.224880539275595 33.49955248689426 21.18060201663381 34 19.59661376794141 23.938234270880724 33.69907494134753 22.76607701983033 35 20.568059160935228 23.175231859364917 33.26851083695358 22.988198142746274 36 21.0679060252213 24.41667187030743 33.657445815232094 20.85797628923917 37 19.553200536421027 25.56979866370505 33.88164839445381 20.99535240542011 38 19.017671564036004 27.292649783082517 31.142154545157197 22.547524107724286 39 21.085747079270778 23.538892011073347 31.960464224226364 23.41489668542951 40 20.292117524970042 24.296839457275134 32.61374415333791 22.79729886441691 41 17.86424741973756 24.400614921662907 31.483513379303783 26.251624279295754 42 20.413139341605635 23.921285269533723 31.225710148288893 24.439865240571745 43 21.13837818871672 24.235882522606104 32.7710427798741 21.854696508803073 44 19.631701174238707 24.6899373481652 32.91020300145999 22.7681584761361 45 20.97424049146157 24.272456683407523 31.045515502389215 23.707787322741694 46 21.238288091393773 24.15024546316863 32.27179061738967 22.339675828047923 47 19.370329732413925 23.70154295382438 33.235504886962055 23.69262242679964 48 18.44675783445286 23.145199418381637 33.89830004489999 24.509742702265516 49 19.677195862064863 21.854101807001424 34.594101152829445 23.874601178104268 50 18.394126725006913 22.556741985649843 34.081170848907085 24.967960440436155 51 18.396802883114336 22.82941276170596 31.913185430995263 26.860598924184444 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 185.0 1 331.0 2 477.0 3 5468.5 4 10460.0 5 7099.0 6 3738.0 7 3359.0 8 2980.0 9 2831.0 10 2682.0 11 2561.5 12 2441.0 13 2289.5 14 2138.0 15 1923.0 16 1708.0 17 1595.5 18 1483.0 19 1505.0 20 1527.0 21 1524.5 22 1522.0 23 1746.0 24 1970.0 25 2455.0 26 3586.5 27 4233.0 28 4782.0 29 5331.0 30 5785.5 31 6240.0 32 6759.0 33 7278.0 34 8234.0 35 9190.0 36 10101.5 37 11013.0 38 11872.5 39 12732.0 40 14288.0 41 15844.0 42 17662.0 43 19480.0 44 20782.5 45 22085.0 46 24119.0 47 26153.0 48 27593.5 49 29034.0 50 30409.0 51 31784.0 52 30355.0 53 28926.0 54 24641.5 55 20357.0 56 17383.5 57 14410.0 58 12580.0 59 10750.0 60 9969.0 61 9188.0 62 8212.5 63 7237.0 64 5683.0 65 4129.0 66 3070.5 67 2012.0 68 1563.0 69 1114.0 70 934.5 71 755.0 72 548.5 73 342.0 74 264.5 75 153.5 76 120.0 77 92.0 78 64.0 79 41.0 80 18.0 81 16.5 82 15.0 83 11.0 84 7.0 85 10.0 86 13.0 87 9.0 88 5.0 89 3.0 90 1.0 91 1.5 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 336303.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.50040528806333 #Duplication Level Percentage of deduplicated Percentage of total 1 75.7512862981401 29.16455223570512 2 10.078073664030196 7.760198411762397 3 3.8211961257637905 4.413527985812501 4 2.0668287921223016 3.18294984630988 5 1.2332946138623058 2.3741171236642167 6 0.8379170610621456 1.935608786920531 7 0.571199730813774 1.5393994795734083 8 0.4779923336854763 1.4722318857182433 9 0.3871518761281353 1.3414953725070569 >10 4.5695565401618845 38.301241085490986 >50 0.17471600329660109 4.135251914495205 >100 0.027708264839989602 1.8564925291517347 >500 0.002309022069999133 0.6892580403522642 >1k 0.0 0.0 >5k 7.696740233330444E-4 1.833675302536462 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6188 1.8400073743023406 No Hit CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC 938 0.2789151449734317 TruSeq Adapter, Index 13 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC 874 0.2598846873206602 TruSeq Adapter, Index 13 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGCT 514 0.15283836302382078 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 427 0.12696883465208458 No Hit TCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC 347 0.10318076258612026 TruSeq Adapter, Index 13 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.19268338373431101 0.0 2 0.0 0.0 0.0 1.0945486659351835 0.0 3 0.0 0.0 0.0 1.3904128122556147 0.0 4 0.0 0.0 0.0 1.7644802454929038 0.0 5 0.0 0.0 0.0 2.822454750626667 0.0 6 0.0 0.0 0.0 3.4076413234493894 0.0 7 0.0 0.0 0.0 4.069841779585671 0.0 8 0.0 0.0 0.0 5.278573191437483 0.0 9 0.0 0.0 0.0 5.734709473302349 0.0 10 0.0 0.0 0.0 6.867616405443901 0.0 11 0.0 0.0 0.0 8.64161187976319 0.0 12 0.0 0.0 0.0 9.890188312325492 0.0 13 0.0 0.0 0.0 10.421851722999795 0.0 14 0.0 0.0 0.0 10.645162249519036 0.0 15 0.0 0.0 0.0 11.010903857533236 0.0 16 0.0 0.0 0.0 11.871140013618671 0.0 17 2.9735090082455405E-4 0.0 0.0 12.910976113802137 0.0 18 2.9735090082455405E-4 0.0 0.0 14.147361159430632 0.0 19 2.9735090082455405E-4 0.0 0.0 14.77982652548446 0.0 20 2.9735090082455405E-4 0.0 0.0 15.439945525314968 0.0 21 2.9735090082455405E-4 0.0 0.0 16.251713484566 0.0 22 2.9735090082455405E-4 0.0 0.0 17.07359137444507 0.0 23 2.9735090082455405E-4 0.0 0.0 17.913607669274434 0.0 24 2.9735090082455405E-4 0.0 0.0 18.518122050650753 0.0 25 2.9735090082455405E-4 0.0 0.0 19.027484143763214 0.0 26 2.9735090082455405E-4 0.0 0.0 19.497001216165184 0.0 27 2.9735090082455405E-4 0.0 0.0 19.98198053541003 0.0 28 2.9735090082455405E-4 0.0 0.0 20.544271088869262 0.0 29 2.9735090082455405E-4 0.0 0.0 21.050362322072655 0.0 30 2.9735090082455405E-4 0.0 0.0 21.677772722812463 0.0 31 2.9735090082455405E-4 0.0 0.0 22.23173745104861 0.0 32 2.9735090082455405E-4 0.0 0.0 22.732179017136332 0.0 33 2.9735090082455405E-4 0.0 0.0 23.227268267009215 0.0 34 2.9735090082455405E-4 0.0 0.0 23.7223575168821 0.0 35 5.947018016491081E-4 0.0 0.0 24.2867295266471 0.0 36 5.947018016491081E-4 0.0 0.0 24.8062015503876 0.0 37 5.947018016491081E-4 0.0 0.0 25.31496894169841 0.0 38 5.947018016491081E-4 0.0 0.0 25.824033683910045 0.0 39 5.947018016491081E-4 0.0 0.0 26.31942028468375 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGTGCGG 45 3.8380676E-10 45.000004 2 AGCGTTG 20 7.026163E-4 45.0 1 TTTAGCG 20 7.026163E-4 45.0 1 ATCCTAC 25 3.8849008E-5 45.0 13 ACTATGC 20 7.026163E-4 45.0 17 GATACGC 20 7.026163E-4 45.0 35 GCGACGT 20 7.026163E-4 45.0 17 AATCACG 25 3.8849008E-5 45.0 45 TTGTGCG 20 7.026163E-4 45.0 1 CGACGTT 20 7.026163E-4 45.0 27 CGACGTC 20 7.026163E-4 45.0 18 CGCGGGT 50 2.1827873E-11 45.0 4 GCGAACG 20 7.026163E-4 45.0 1 AACCCCG 25 3.8849008E-5 45.0 10 TTTCGCG 25 3.8849008E-5 45.0 1 TTTCGAC 20 7.026163E-4 45.0 24 GCCGGTC 20 7.026163E-4 45.0 21 TTACTAG 20 7.026163E-4 45.0 1 AGGCGAT 55 1.8189894E-12 45.0 7 ATGTCGG 20 7.026163E-4 45.0 2 >>END_MODULE