SRR2936640.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936640.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	998485
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11240	1.125705443747277	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	9175	0.9188921215641697	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTT	5742	0.5750712329178705	No Hit
GAATCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTC	2097	0.21001817753897156	TruSeq Adapter, Index 14 (95% over 22bp)
GCTCAACTTGACCCTGCATTAGAACTGTCTCTTATACACATCTGACGCATT	1745	0.17476476862446608	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCG	1718	0.1720606719179557	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACCTGTCTCTTATACACATC	1651	0.1653505060166152	No Hit
GCTCAACTTGACCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATG	1589	0.15914109876462842	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGC	1328	0.13300149726836158	No Hit
GCTCAAATTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	1178	0.11797873778774844	No Hit
GCTCAACTTGACCCCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTA	1034	0.10355688868635983	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATCGT	25	3.890436E-5	45.0	33
TCGTACT	25	3.890436E-5	45.0	30
TACGTCG	25	3.890436E-5	45.0	1
TCGATAG	30	2.165214E-6	44.999996	1
CGTTTTT	4985	0.0	43.32999	1
TGCATTA	2580	0.0	43.081394	15
TTGACCC	2765	0.0	42.802895	8
GCATTAG	2595	0.0	42.745663	16
ACTTGAC	2625	0.0	42.6	6
ACCCTGC	2685	0.0	42.48604	11
CATTAGA	2600	0.0	42.31731	17
CTCAACT	2695	0.0	42.2449	2
TCAACTT	2680	0.0	42.145523	3
CTTGACC	2685	0.0	41.64805	7
ATTAGAA	2670	0.0	41.629215	18
CAACTTG	2705	0.0	41.50647	4
TGACCCT	2760	0.0	41.494568	9
CCTGCAT	2755	0.0	41.4882	13
GCTCAAC	2840	0.0	41.43486	1
CTGCATT	2720	0.0	41.02941	14