SRR2936639.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936639.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1240247
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3995	0.3221132564722995	No Hit
GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	1891	0.15246962903357153	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGGT	20	7.033502E-4	45.000004	17
CGGTCTA	30	2.1656415E-6	45.000004	31
TAGTGCG	40	6.8157533E-9	45.000004	1
GTCGGTA	20	7.033502E-4	45.000004	18
CGCTTAT	20	7.033502E-4	45.000004	21
TGATCGC	25	3.890985E-5	45.0	19
CTACGCG	25	3.890985E-5	45.0	1
TAGTACG	50	2.1827873E-11	45.0	1
TTAACGG	70	0.0	41.785717	2
CGTTTTT	2535	0.0	41.62722	1
TTACGCG	60	3.6379788E-12	41.250004	1
TCGACGG	60	3.6379788E-12	41.250004	2
TACGCGG	110	0.0	40.90909	2
GTTAGCG	95	0.0	40.263157	1
CGACGTT	45	1.9284926E-8	40.000004	27
CTATGCG	40	3.4585173E-7	39.375004	1
TACGATG	35	6.248689E-6	38.57143	1
GTATGCG	35	6.248689E-6	38.57143	1
TCGCAAG	30	1.1399739E-4	37.500004	1
CTACGGG	240	0.0	37.500004	3