SRR2936638.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936638.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	415909
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2012	0.4837596685813483	No Hit
GCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	760	0.18273228037864053	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCG	717	0.17239348030458587	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGC	701	0.16854648492819344	No Hit
CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	693	0.16662298723999722	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTC	661	0.15892899648721234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGT	20	7.028091E-4	45.0	32
ATTCGAT	20	7.028091E-4	45.0	27
TTACGAT	20	7.028091E-4	45.0	30
CGCCGAA	20	7.028091E-4	45.0	44
TGCGTAG	20	7.028091E-4	45.0	1
GGTAATC	30	2.162149E-6	44.999996	8
ATAACGG	30	2.162149E-6	44.999996	2
TGCGGGC	110	0.0	40.909092	4
TAGGCGG	50	1.0786607E-9	40.500004	2
GCGTAAG	50	1.0786607E-9	40.500004	1
CGTTTTT	1100	0.0	40.090908	1
TCGTTCA	45	1.9232175E-8	40.0	16
GCGATAA	45	1.9232175E-8	40.0	9
AGTACGG	45	1.9232175E-8	40.0	2
ACGGGCC	40	3.4511322E-7	39.375	5
CTCGATC	40	3.4511322E-7	39.375	16
TACGGGC	70	0.0	38.571426	4
TACATCG	35	6.238679E-6	38.571426	21
TTAAGCG	35	6.238679E-6	38.571426	1
CTCGCCG	35	6.238679E-6	38.571426	20