SRR2936637.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936637.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	723354
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGC	3142	0.43436546974233914	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCG	2766	0.3823853880672534	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTC	2715	0.3753348982655795	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2479	0.3427091023205789	No Hit
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	1423	0.19672248995650812	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGCA	20	7.03155E-4	45.000004	34
CGTTGAT	45	3.8380676E-10	45.000004	25
CGTTAGA	20	7.03155E-4	45.000004	15
GCCGATA	30	2.164381E-6	45.000004	9
CTAACCG	20	7.03155E-4	45.000004	2
TCTATCG	20	7.03155E-4	45.000004	29
CCGCATG	75	0.0	42.0	24
GCGTAAG	60	3.6379788E-12	41.250004	1
TACGGAA	85	0.0	39.705883	5
CGTTTTT	1290	0.0	39.59302	1
ACGGGTA	105	0.0	38.57143	5
GCCGATT	35	6.245078E-6	38.57143	9
TCGCGCA	35	6.245078E-6	38.57143	33
ACATACG	170	0.0	38.38235	17
ATAGCGG	95	0.0	37.894737	2
CGTAAGT	30	1.13950344E-4	37.500004	36
TATAGCG	30	1.13950344E-4	37.500004	1
ACACGAC	85	0.0	37.058823	26
TGTAGCG	55	2.746674E-9	36.81818	1
TACGGGA	130	0.0	36.346153	4