SRR2936634.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936634.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	919039
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11292	1.2286747352397451	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC	5042	0.5486165440204387	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCG	4332	0.4713619334979256	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGC	4311	0.4690769379754287	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	1465	0.1594056400218054	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	1346	0.1464573320609898	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTT	935	0.10173670540640821	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTCACG	20	7.0325466E-4	45.000004	42
TTACCCG	20	7.0325466E-4	45.000004	12
CGTTTTT	5600	0.0	43.433037	1
CGAATAT	95	0.0	42.63158	14
CGCACGG	55	6.002665E-11	40.909092	2
AATAGCG	50	1.0804797E-9	40.500004	1
GACCGAT	340	0.0	39.705883	9
CGTTTTA	370	0.0	38.918922	1
ACGGGTA	105	0.0	38.57143	5
GTATGCG	35	6.2469226E-6	38.571426	1
TATCCGG	35	6.2469226E-6	38.571426	2
TACGGCT	480	0.0	38.437496	7
CACGACC	230	0.0	38.152172	27
TACGGGT	95	0.0	37.894737	4
TCTAGCG	30	1.139744E-4	37.499996	1
AGTTGCG	30	1.139744E-4	37.499996	1
GCGTACG	30	1.139744E-4	37.499996	1
CACGTGA	230	0.0	37.173912	43
TCAAGCG	255	0.0	37.058823	17
AGCGACT	225	0.0	37.0	19