SRR2936632.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936632.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	917702
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17416	1.8977838121743225	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC	3567	0.3886882669973477	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG	2200	0.23972923672390384	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC	2051	0.22349302932760307	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1238	0.13490217957463316	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCT	1143	0.1245502352615555	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1043	0.11365345177410532	No Hit
GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	1040	0.11332654826948182	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTT	922	0.10046834375429062	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCTAG	25	3.890189E-5	45.0	2
TTACGCG	20	7.032544E-4	45.0	1
CGTTTTT	8450	0.0	44.068047	1
CGTTTTA	475	0.0	39.789474	1
CACAACG	215	0.0	39.767445	12
CGGTCTA	65	9.094947E-12	38.07692	31
ACACGAC	95	0.0	37.894737	26
GCGGTAT	30	1.13974245E-4	37.500004	1
CGCATAG	30	1.13974245E-4	37.500004	2
TAACGCG	30	1.13974245E-4	37.500004	1
GCGCATA	30	1.13974245E-4	37.500004	1
TCTACGG	30	1.13974245E-4	37.500004	2
ACAACGA	230	0.0	37.173912	13
GTTTTTT	10290	0.0	37.12828	2
ATTAGCG	55	2.748493E-9	36.81818	1
AGCGACT	215	0.0	36.62791	19
TACGGCT	295	0.0	36.61017	7
CGTTGAT	150	0.0	36.000004	25
GCTATCG	25	0.0021068878	36.0	1
CACGACC	100	0.0	36.0	27