SRR2936631.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936631.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	192655
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3781	1.962575588487192	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	1191	0.6182035244348706	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC	1129	0.5860216449092938	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG	1097	0.5694116425735123	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC	861	0.4469128753471231	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	514	0.26679816251849164	No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT	485	0.25174534790168956	No Hit
TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	315	0.16350471049284993	No Hit
ACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	302	0.15675689704393864	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	269	0.13962783213516392	No Hit
GGCAAAGGGAATAAATAAATAAGAAAAAAAGATAGAGAAAATGTATGTGAG	251	0.13028470582128673	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT	238	0.1235368923723755	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC	217	0.11263657833951884	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	209	0.10848407775557344	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCACAT	20	7.0186576E-4	45.0	33
CTTGTGT	35	1.2048986E-7	45.0	37
GCCCCGG	20	7.0186576E-4	45.0	14
ATTTACG	20	7.0186576E-4	45.0	1
ATGGGTA	20	7.0186576E-4	45.0	5
GTGCAAC	40	6.7648216E-9	45.0	2
CGGGTCC	20	7.0186576E-4	45.0	6
TGTCAAC	25	3.8786846E-5	45.0	21
GAAGCGA	25	3.8786846E-5	45.0	13
ATTAGTG	20	7.0186576E-4	45.0	29
AGTCATC	25	3.8786846E-5	45.0	40
CTTCCAA	20	7.0186576E-4	45.0	10
CCCTAGC	25	3.8786846E-5	45.0	21
AACCCGC	20	7.0186576E-4	45.0	25
GGGTCGT	20	7.0186576E-4	45.0	7
GCGCGAC	20	7.0186576E-4	45.0	9
AGCCCCG	20	7.0186576E-4	45.0	13
GCAACGG	40	6.7648216E-9	45.0	4
CATGAGC	20	7.0186576E-4	45.0	28
GACGTCC	20	7.0186576E-4	45.0	15