##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936631.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 192655 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.985938594897615 31.0 30.0 33.0 28.0 34.0 2 31.037574939658978 31.0 31.0 33.0 28.0 34.0 3 30.639277464898395 31.0 30.0 34.0 27.0 34.0 4 34.586016454283566 35.0 35.0 37.0 32.0 37.0 5 34.99992214061405 35.0 35.0 37.0 32.0 37.0 6 35.05667125171939 35.0 35.0 37.0 32.0 37.0 7 31.27240922893255 35.0 35.0 37.0 0.0 37.0 8 33.25480781708235 36.0 35.0 37.0 17.0 37.0 9 36.42198749059199 39.0 35.0 39.0 32.0 39.0 10 36.18015104720874 37.0 35.0 39.0 32.0 39.0 11 36.47914147050427 38.0 35.0 39.0 32.0 39.0 12 36.420975318574655 38.0 35.0 39.0 32.0 39.0 13 36.13940982585451 38.0 35.0 39.0 32.0 39.0 14 37.08896732501103 39.0 36.0 40.0 32.0 41.0 15 37.36042147880927 39.0 36.0 41.0 32.0 41.0 16 37.42044068412447 39.0 36.0 40.0 32.0 41.0 17 37.356284550102515 39.0 35.0 40.0 32.0 41.0 18 37.193589577223534 39.0 36.0 40.0 32.0 41.0 19 36.85269523241027 38.0 35.0 40.0 32.0 41.0 20 36.684160805585115 38.0 35.0 40.0 32.0 41.0 21 36.66512159040772 38.0 35.0 40.0 32.0 41.0 22 36.741719654304326 38.0 35.0 40.0 32.0 41.0 23 36.81016843580494 38.0 35.0 40.0 32.0 41.0 24 36.70190236433002 38.0 35.0 40.0 32.0 41.0 25 36.40209182216916 38.0 35.0 40.0 31.0 41.0 26 36.424042978381046 38.0 35.0 40.0 31.0 41.0 27 36.4672341750798 38.0 35.0 40.0 31.0 41.0 28 36.44753575043472 38.0 35.0 40.0 31.0 41.0 29 36.42999143546754 38.0 35.0 40.0 31.0 41.0 30 36.14860761464794 38.0 35.0 40.0 31.0 41.0 31 35.93933196646856 38.0 35.0 40.0 30.0 41.0 32 35.515143650567076 38.0 35.0 40.0 29.0 41.0 33 35.12665645843607 38.0 34.0 40.0 25.0 41.0 34 34.82464509096572 38.0 34.0 40.0 23.0 41.0 35 34.591030598738676 38.0 34.0 40.0 23.0 41.0 36 34.48121253017051 38.0 34.0 40.0 21.0 41.0 37 34.33943577898316 38.0 34.0 40.0 21.0 41.0 38 34.22249098128779 38.0 34.0 40.0 20.0 41.0 39 34.18010433157717 38.0 34.0 40.0 19.0 41.0 40 34.017995899405676 38.0 33.0 40.0 18.0 41.0 41 33.8817471646207 37.0 33.0 40.0 18.0 41.0 42 33.86978796293893 37.0 33.0 40.0 18.0 41.0 43 33.78318237263502 37.0 33.0 40.0 17.0 41.0 44 33.57031481145052 37.0 33.0 40.0 15.0 41.0 45 33.50540084607199 37.0 33.0 40.0 15.0 41.0 46 33.38329137577535 37.0 33.0 40.0 15.0 41.0 47 33.324211673717265 37.0 33.0 40.0 15.0 41.0 48 33.202776984765514 37.0 33.0 40.0 15.0 41.0 49 33.111380446912875 37.0 33.0 40.0 14.0 41.0 50 32.89117853157198 36.0 32.0 40.0 12.0 41.0 51 31.28729075290026 35.0 29.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 4.0 9 11.0 10 11.0 11 9.0 12 7.0 13 7.0 14 5.0 15 5.0 16 22.0 17 45.0 18 115.0 19 226.0 20 377.0 21 613.0 22 1035.0 23 1580.0 24 2594.0 25 3782.0 26 4880.0 27 4661.0 28 4300.0 29 4287.0 30 4817.0 31 5895.0 32 7621.0 33 10632.0 34 16634.0 35 18891.0 36 17548.0 37 25867.0 38 33260.0 39 22913.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.94093067919338 20.229425657262983 24.41514624587994 19.414497417663696 2 37.579092159559835 23.547792686408346 24.804962238197813 14.068152915834004 3 27.966053307726245 22.64047130881628 34.36401858244012 15.029456801017362 4 25.570579533362746 21.877968389089304 36.3572188627339 16.194233214814048 5 22.503957852119072 26.96737691728738 34.27422075731229 16.254444473281254 6 21.64023773065843 31.32490721756508 33.77280631180089 13.262048739975604 7 60.55020632737277 16.44338324985077 19.02883392592977 3.977576496846695 8 70.81934027146973 5.591342036282474 18.29124600970647 5.29807168254133 9 67.21289351431315 5.223845734603307 20.19257221458047 7.370688536503075 10 37.40364900988814 22.771275077210557 26.774285640133915 13.050790272767381 11 28.511069009369077 23.84106304014949 32.2358620331681 15.412005917313332 12 27.46100542420389 20.19828190288339 35.875528794996235 16.465183877916484 13 20.582907269471335 27.81292984869326 37.307622433884404 14.296540447951001 14 16.00529443824453 32.890919000285486 34.96509304196621 16.13869351950378 15 12.93763463185487 25.578365471957643 46.615452492798006 14.86854740338948 16 15.943006929485348 23.96356180737588 41.526043964599936 18.56738729853884 17 15.39539591497755 22.70431600529444 36.4937323194311 25.406555760296907 18 18.655627935947678 23.65316238872596 38.55804417222496 19.1331655031014 19 18.547143858192104 26.46907684721393 35.25732527056137 19.7264540240326 20 21.306999558796814 25.09667540421998 36.47037450364641 17.125950533336795 21 18.967584542316576 26.55576029690379 36.516052010069814 17.960603150709815 22 16.49269419428512 23.674963016791676 35.81220316109107 24.020139627832133 23 14.64275518413745 26.36422620746931 36.62972671355532 22.36329189483792 24 18.620850743557135 23.42269860631699 37.46853183151229 20.487918818613586 25 14.285640133918143 26.454543095170123 37.312813059614335 21.9470037112974 26 15.044509615634164 27.298538838857024 37.94191689808206 19.715034647426748 27 16.505151696036958 27.46619604993382 38.13137473722457 17.897277516804653 28 13.283330305468324 25.08888946562508 42.61036567958267 19.01741454932392 29 14.731514884119282 21.608055851132853 41.99164309257481 21.668786172173053 30 16.430406685525938 24.65547221717578 40.1292465806753 18.784874516622978 31 21.009057641898732 24.646648153434896 35.27289714775116 19.071397056915213 32 19.2774648983935 27.261166333601516 33.31499312242091 20.146375645584076 33 17.928940333757236 27.129324440061247 32.55560457813189 22.386130648049622 34 18.012509408009137 24.84337286859931 34.86647115309751 22.27764657029405 35 15.087072746619604 26.898341595079287 34.07957229243985 23.935013365861256 36 19.91954530118606 25.174534790168956 36.264306662168124 18.64161324647686 37 17.68290467415847 25.950014274220756 36.8446186187745 19.52246243284628 38 15.896810360488958 29.317173185227478 30.56344242298409 24.222574031299473 39 19.551529936933896 25.013625392541073 32.5545664529859 22.880278217539125 40 21.010095767044717 25.54306921699411 31.996574187018247 21.45026082894293 41 18.020295346604033 26.933637850042825 31.034232176688896 24.011834626664243 42 20.53826788819392 25.56175546962186 32.97500713711038 20.924969505073836 43 21.527082089745917 24.44421374996756 32.13775920687239 21.890944953414134 44 17.81682281799071 25.53216890296125 32.80994523889855 23.84106304014949 45 17.999013781111316 25.162596350990114 30.760686200721498 26.077703667177076 46 21.843710259271756 25.518154213490433 30.99270717084945 21.645428356388365 47 17.78983156419506 25.0416547714827 34.972878980561106 22.195634683761128 48 19.433702732864447 24.668967844073602 32.43673924891646 23.460590174145494 49 18.67535231372142 21.621551478030675 36.025018816018274 23.678077392229632 50 18.09296410682308 23.40401235368924 34.423191715761334 24.07983182372635 51 17.90662064311853 24.130180893306687 29.756300121979706 28.20689834159508 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 160.0 1 199.5 2 239.0 3 3116.0 4 5993.0 5 4083.5 6 2174.0 7 2094.0 8 2014.0 9 2085.0 10 2156.0 11 2184.5 12 2213.0 13 2150.5 14 2088.0 15 1925.0 16 1762.0 17 1624.0 18 1486.0 19 1394.5 20 1303.0 21 1250.0 22 1197.0 23 1107.0 24 1017.0 25 1165.0 26 1502.5 27 1692.0 28 1825.5 29 1959.0 30 2269.5 31 2580.0 32 2957.0 33 3334.0 34 4072.5 35 4811.0 36 4949.0 37 5087.0 38 6367.5 39 7648.0 40 9408.0 41 11168.0 42 13749.5 43 16331.0 44 20632.0 45 24933.0 46 24499.5 47 24066.0 48 22428.5 49 20791.0 50 16875.0 51 12959.0 52 10893.5 53 8828.0 54 7610.5 55 6393.0 56 5404.5 57 4416.0 58 3984.5 59 3553.0 60 3254.5 61 2956.0 62 2372.5 63 1789.0 64 1366.0 65 943.0 66 758.5 67 574.0 68 455.5 69 337.0 70 249.0 71 161.0 72 128.0 73 95.0 74 83.0 75 52.5 76 34.0 77 25.5 78 17.0 79 12.0 80 7.0 81 4.0 82 1.0 83 2.0 84 3.0 85 2.0 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 192655.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.71705899146142 #Duplication Level Percentage of deduplicated Percentage of total 1 77.20791340052259 32.208870779372454 2 10.039815851685953 8.376631802963848 3 3.7625979843225084 4.708935662194078 4 2.0057235286798556 3.3469154706599884 5 1.2081622495956204 2.520048791881861 6 0.8286674132138858 2.074174041680725 7 0.5835510762722409 1.704082427136591 8 0.39815851685952475 1.3288001868625263 9 0.33470200323503796 1.2566504892164752 >10 3.4502923976608186 31.733928525083698 >50 0.13562274480527559 3.576341127922971 >100 0.03732736095558044 2.714697256754302 >500 0.0024884907303720292 0.7137110378656146 >1k 0.0049769814607440585 3.736212400404869 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3781 1.962575588487192 No Hit GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 1191 0.6182035244348706 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC 1129 0.5860216449092938 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG 1097 0.5694116425735123 No Hit GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC 861 0.4469128753471231 No Hit CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 514 0.26679816251849164 No Hit CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT 485 0.25174534790168956 No Hit TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 315 0.16350471049284993 No Hit ACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 302 0.15675689704393864 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 269 0.13962783213516392 No Hit GGCAAAGGGAATAAATAAATAAGAAAAAAAGATAGAGAAAATGTATGTGAG 251 0.13028470582128673 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT 238 0.1235368923723755 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC 217 0.11263657833951884 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 209 0.10848407775557344 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.28756066543821857 0.0 2 0.0 0.0 0.0 1.682281799070878 0.0 3 0.0 0.0 0.0 2.159300303651605 0.0 4 0.0 0.0 0.0 2.984609794710752 0.0 5 0.0 0.0 0.0 5.112247281409774 0.0 6 0.0 0.0 0.0 6.008149282395993 0.0 7 0.0 0.0 0.0 7.1272481897692765 0.0 8 0.0 0.0 0.0 8.907632815135864 0.0 9 0.0 0.0 0.0 9.477044457709377 0.0 10 0.0 0.0 0.0 11.454153798240378 0.0 11 0.0 0.0 0.0 13.379875944045054 0.0 12 0.0 0.0 0.0 15.549557499156524 0.0 13 0.0 0.0 0.0 16.29129791596377 0.0 14 0.0 0.0 0.0 16.59183514572682 0.0 15 0.0 0.0 0.0 17.117645532168904 0.0 16 0.0 0.0 0.0 18.115802860034776 0.0 17 0.0 0.0 0.0 19.41138304222574 0.0 18 0.0 0.0 0.0 20.97116607407023 0.0 19 0.0 0.0 0.0 21.77467493706366 0.0 20 0.0 0.0 0.0 22.55949754742934 0.0 21 0.0 0.0 0.0 23.440865796371753 0.0 22 0.0 0.0 0.0 24.342477485660897 0.0 23 0.0 0.0 0.0 25.2015260439646 0.0 24 0.0 0.0 0.0 25.880978952012665 0.0 25 0.0 0.0 0.0 26.498663413874542 0.0 26 0.0 0.0 0.0 27.023954737743637 0.0 27 0.0 0.0 0.0 27.50875918091926 0.0 28 0.0 0.0 0.0 28.04495081882121 0.0 29 0.0 0.0 0.0 28.572837455555266 0.0 30 0.0 0.0 0.0 29.224780047234695 0.0 31 0.0 0.0 0.0 29.852845760556434 0.0 32 0.0 0.0 0.0 30.344917079753966 0.0 33 0.0 0.0 0.0 30.860346214736186 0.0 34 0.0 0.0 0.0 31.3840803508863 0.0 35 0.0 0.0 0.0 32.03550387999273 0.0 36 0.0 0.0 0.0 32.58207676935454 0.0 37 0.0 0.0 0.0 33.08349121486595 0.0 38 0.0 0.0 0.0 33.61864472762191 0.0 39 0.0 0.0 0.0 34.14082167605305 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCACAT 20 7.0186576E-4 45.0 33 CTTGTGT 35 1.2048986E-7 45.0 37 GCCCCGG 20 7.0186576E-4 45.0 14 ATTTACG 20 7.0186576E-4 45.0 1 ATGGGTA 20 7.0186576E-4 45.0 5 GTGCAAC 40 6.7648216E-9 45.0 2 CGGGTCC 20 7.0186576E-4 45.0 6 TGTCAAC 25 3.8786846E-5 45.0 21 GAAGCGA 25 3.8786846E-5 45.0 13 ATTAGTG 20 7.0186576E-4 45.0 29 AGTCATC 25 3.8786846E-5 45.0 40 CTTCCAA 20 7.0186576E-4 45.0 10 CCCTAGC 25 3.8786846E-5 45.0 21 AACCCGC 20 7.0186576E-4 45.0 25 GGGTCGT 20 7.0186576E-4 45.0 7 GCGCGAC 20 7.0186576E-4 45.0 9 AGCCCCG 20 7.0186576E-4 45.0 13 GCAACGG 40 6.7648216E-9 45.0 4 CATGAGC 20 7.0186576E-4 45.0 28 GACGTCC 20 7.0186576E-4 45.0 15 >>END_MODULE