SRR2936630.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936630.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	866273
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14685	1.6951930857824267	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	6078	0.7016263926037173	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCG	3500	0.4040296765569284	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGC	2929	0.3381151207529266	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCT	1919	0.2215236998036416	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTT	1526	0.17615693897882076	No Hit
GCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	1415	0.1633434263794439	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1054	0.12167065116885786	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTT	954	0.1101269461243742	No Hit
ACCATACGGAAAGAGTTCCGAACCCGCATGGTTATGAACAATGGACTCAAC	904	0.10435509360213234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGACGG	25	3.890007E-5	45.0	2
CGCATTC	30	2.1648812E-6	44.999996	27
CCATACG	120	0.0	43.124996	2
CGTTTTT	6495	0.0	42.74827	1
CGTTTTA	415	0.0	40.12048	1
CGAACCC	145	0.0	38.793106	19
CCGCATG	160	0.0	37.96875	24
ACGGGAC	90	0.0	37.5	5
GCGTTAG	55	2.748493E-9	36.81818	1
TAGACGG	80	0.0	36.5625	2
CCGAACC	155	0.0	36.29032	18
GTTTTTT	7955	0.0	36.090508	2
CATACGA	75	1.8189894E-12	36.000004	18
CGTTAGG	100	0.0	36.0	2
GTCGTAC	25	0.0021068226	36.0	37
ATACCGG	50	4.8765287E-8	36.0	2
CTCGTAA	115	0.0	35.21739	33
TCCGAAC	160	0.0	35.15625	17
ACGTCAT	90	0.0	35.0	35
ATAACGG	45	8.696643E-7	35.0	2