SRR2936629.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936629.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1061044
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9205	0.8675417796057467	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTC	6500	0.6126041898356712	RNA PCR Primer, Index 41 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCG	4460	0.4203407210257068	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGC	3832	0.3611537316077373	No Hit
GCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTGC	2060	0.19414840477868966	Illumina PCR Primer Index 11 (96% over 25bp)
GAACTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCT	2019	0.19028428604280312	Illumina PCR Primer Index 11 (95% over 23bp)
GAATGCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTT	1393	0.13128579022170617	RNA PCR Primer, Index 41 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATGCG	25	3.8906015E-5	45.000004	1
CGTTTTT	5160	0.0	42.1657	1
CGAATAT	120	0.0	41.249996	14
ACAACGA	260	0.0	40.67308	13
CGGTCTA	50	1.0822987E-9	40.500004	31
TCGATAG	35	6.2478357E-6	38.571426	1
TACGGCT	485	0.0	38.505157	7
AGCGACT	270	0.0	38.333336	19
GACCGAT	415	0.0	37.95181	9
CGTTTTA	305	0.0	37.622948	1
CGTCTAC	30	1.1398629E-4	37.499996	36
TATTGCG	30	1.1398629E-4	37.499996	1
ACGGGAC	265	0.0	37.35849	5
ATTTGCG	55	2.748493E-9	36.81818	1
AGTACGG	110	0.0	36.81818	2
CACAACG	290	0.0	36.465515	12
CCGGATA	25	0.0021070354	36.000004	19
TTCGTAA	50	4.8783477E-8	36.000004	44
CAATTCG	25	0.0021070354	36.000004	39
CGAATTT	25	0.0021070354	36.000004	16