SRR2936628.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936628.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	777772
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCG	2377	0.30561655600870175	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	2330	0.2995736539757152	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGC	2224	0.28594498130557544	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2202	0.283116388864603	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1294	0.16637266448265045	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGCTA	20	7.0318783E-4	45.0	44
TAACGCC	20	7.0318783E-4	45.0	12
CTTATCG	20	7.0318783E-4	45.0	32
TGTTACG	20	7.0318783E-4	45.0	1
GAACCGG	25	3.889638E-5	45.0	2
ATACGTC	25	3.889638E-5	45.0	42
TGTCGTA	20	7.0318783E-4	45.0	44
CGATAAT	20	7.0318783E-4	45.0	36
TCGGTAA	20	7.0318783E-4	45.0	41
TACGTCC	20	7.0318783E-4	45.0	12
TATCGCG	30	2.1645938E-6	44.999996	1
CGTTTTA	120	0.0	43.124996	1
CGAACGG	65	0.0	41.538464	2
GCGAACG	50	1.0804797E-9	40.5	1
CGTTTTT	1595	0.0	40.485893	1
CGCCGGT	145	0.0	40.344826	28
CTACGGG	190	0.0	40.26316	3
ACAACGT	45	1.9268555E-8	40.0	22
GGCTACG	45	1.9268555E-8	40.0	1
TTGCGCG	85	0.0	39.705883	1