SRR2936625.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936625.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	835004
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGC	5190	0.6215539087237906	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCG	4907	0.5876618555120694	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC	4267	0.5110155160933361	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2802	0.3355672547676418	No Hit
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	1805	0.21616662914189633	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTT	1626	0.19472960608571935	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCT	862	0.10323303840460644	No Hit
GAACTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT	859	0.10287375868858113	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGAAT	25	3.8898856E-5	45.0	27
TCGCGCA	25	3.8898856E-5	45.0	34
TAGTACG	25	3.8898856E-5	45.0	1
ATTAGCG	30	2.1647866E-6	44.999996	1
CGACGGT	100	0.0	42.75	28
TTAGCGG	130	0.0	41.53846	2
ACGTGCG	65	0.0	41.53846	1
TACGGCT	640	0.0	41.484375	7
CGCATAG	55	6.002665E-11	40.909092	2
CGGTCTA	55	6.002665E-11	40.909092	31
GCTTGCG	45	1.9272193E-8	40.0	1
GTTAGCG	40	3.4567165E-7	39.375	1
CGGGATA	195	0.0	39.23077	6
CGTTTTT	1485	0.0	38.939396	1
TACGGGA	215	0.0	38.720932	4
CTATCGA	35	6.246235E-6	38.57143	14
ACGGAAC	35	6.246235E-6	38.57143	40
TCTATCG	35	6.246235E-6	38.57143	13
TCACGAC	65	9.094947E-12	38.07692	25
CGCTCAT	65	9.094947E-12	38.07692	13