SRR2936624.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936624.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	652731
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3123	0.47845130689365145	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTC	949	0.14538914192829816	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCG	939	0.14385711725044467	No Hit
GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	930	0.1424782950403765	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGC	856	0.13114131242426053	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCATGCG	20	7.031043E-4	45.000004	1
TTGCGTC	20	7.031043E-4	45.000004	13
CGATGCA	20	7.031043E-4	45.000004	10
CGCGTAA	20	7.031043E-4	45.000004	31
TCGAATT	20	7.031043E-4	45.000004	31
TCGCGTA	20	7.031043E-4	45.000004	30
TCGTTCA	25	3.888947E-5	45.0	16
TCCGATT	25	3.888947E-5	45.0	21
TGCGATG	25	3.888947E-5	45.0	1
TTCGAAT	25	3.888947E-5	45.0	32
TAATCCG	25	3.888947E-5	45.0	18
TGCGCAA	30	2.1640553E-6	44.999996	1
CTAGTCG	30	2.1640553E-6	44.999996	1
CGTCATA	60	0.0	44.999996	38
CGAATAT	115	0.0	43.043476	14
TACGGGT	70	0.0	41.785717	4
TACGAAT	120	0.0	41.249996	12
GCTACGA	120	0.0	41.249996	10
TGTTACG	50	1.0804797E-9	40.5	1
CGGGTAT	90	0.0	40.0	6