SRR2936623.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936623.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	434681
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3799	0.8739742477817065	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCG	1926	0.4430835486253138	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGC	1699	0.39086134429616204	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	1352	0.3110326883392649	No Hit
GCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	970	0.22315215065760868	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	705	0.16218790331300426	No Hit
CCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	545	0.12537930114267704	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGTA	20	7.02844E-4	45.000004	1
ACCGTCT	20	7.02844E-4	45.000004	35
CGCGTTT	20	7.02844E-4	45.000004	20
TTGCACG	40	6.7975634E-9	45.000004	1
CGTTTTA	80	0.0	45.000004	1
TAGCTAG	45	3.8380676E-10	45.000004	1
TGTAACG	20	7.02844E-4	45.000004	1
AATGTCG	20	7.02844E-4	45.000004	15
ATCGAAA	20	7.02844E-4	45.000004	17
CTATGAG	25	3.88679E-5	45.0	1
GTTAGAT	25	3.88679E-5	45.0	24
TACGCTC	25	3.88679E-5	45.0	20
TACCTAG	25	3.88679E-5	45.0	25
GCCACGA	25	3.88679E-5	45.0	43
AATCGCT	25	3.88679E-5	45.0	37
CGCATCG	30	2.1623746E-6	44.999996	21
CCGCTAG	30	2.1623746E-6	44.999996	10
CGTTTTT	1755	0.0	42.051285	1
TACGGGT	50	1.0786607E-9	40.5	4
TTCACGG	45	1.9235813E-8	40.000004	2