Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936620.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 159070 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1933 | 1.215188281888477 | No Hit |
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC | 651 | 0.40925378764066134 | No Hit |
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC | 411 | 0.2583768152385742 | No Hit |
GGGGGAGGGCTTATTAATACACCTAATCGGAGGAGCTACTCTAGTATTAAT | 401 | 0.2520902747218206 | No Hit |
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT | 330 | 0.20745583705286982 | Illumina Single End Adapter 1 (95% over 21bp) |
GAATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC | 310 | 0.19488275601936253 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG | 299 | 0.18796756145093355 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGC | 293 | 0.18419563714088136 | No Hit |
TCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC | 280 | 0.17602313446910164 | No Hit |
ACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC | 177 | 0.11127176714653926 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAATACA | 80 | 0.0 | 45.0 | 15 |
CGAACTT | 20 | 7.0149486E-4 | 45.0 | 27 |
GTTCTCG | 20 | 7.0149486E-4 | 45.0 | 43 |
CGAAAGG | 20 | 7.0149486E-4 | 45.0 | 2 |
ACGTTGT | 20 | 7.0149486E-4 | 45.0 | 38 |
TTAGCGG | 20 | 7.0149486E-4 | 45.0 | 2 |
GCGAAAG | 20 | 7.0149486E-4 | 45.0 | 1 |
CTTTTCG | 25 | 3.875613E-5 | 45.0 | 12 |
CTTTTCA | 20 | 7.0149486E-4 | 45.0 | 11 |
AGCCACT | 25 | 3.875613E-5 | 45.0 | 36 |
GGCCGGT | 20 | 7.0149486E-4 | 45.0 | 9 |
GCACGTT | 20 | 7.0149486E-4 | 45.0 | 36 |
AAGACCC | 20 | 7.0149486E-4 | 45.0 | 21 |
ACCGACT | 20 | 7.0149486E-4 | 45.0 | 41 |
TCTAGTA | 75 | 0.0 | 45.0 | 40 |
CGACAAT | 20 | 7.0149486E-4 | 45.0 | 20 |
TATTGGG | 45 | 3.8016879E-10 | 45.0 | 3 |
AAACGAC | 20 | 7.0149486E-4 | 45.0 | 37 |
TCGGAGG | 80 | 0.0 | 45.0 | 27 |
CCCCGCA | 20 | 7.0149486E-4 | 45.0 | 25 |