SRR2936620.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936620.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	159070
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1933	1.215188281888477	No Hit
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	651	0.40925378764066134	No Hit
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	411	0.2583768152385742	No Hit
GGGGGAGGGCTTATTAATACACCTAATCGGAGGAGCTACTCTAGTATTAAT	401	0.2520902747218206	No Hit
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	330	0.20745583705286982	Illumina Single End Adapter 1 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC	310	0.19488275601936253	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG	299	0.18796756145093355	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGC	293	0.18419563714088136	No Hit
TCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	280	0.17602313446910164	No Hit
ACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	177	0.11127176714653926	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACA	80	0.0	45.0	15
CGAACTT	20	7.0149486E-4	45.0	27
GTTCTCG	20	7.0149486E-4	45.0	43
CGAAAGG	20	7.0149486E-4	45.0	2
ACGTTGT	20	7.0149486E-4	45.0	38
TTAGCGG	20	7.0149486E-4	45.0	2
GCGAAAG	20	7.0149486E-4	45.0	1
CTTTTCG	25	3.875613E-5	45.0	12
CTTTTCA	20	7.0149486E-4	45.0	11
AGCCACT	25	3.875613E-5	45.0	36
GGCCGGT	20	7.0149486E-4	45.0	9
GCACGTT	20	7.0149486E-4	45.0	36
AAGACCC	20	7.0149486E-4	45.0	21
ACCGACT	20	7.0149486E-4	45.0	41
TCTAGTA	75	0.0	45.0	40
CGACAAT	20	7.0149486E-4	45.0	20
TATTGGG	45	3.8016879E-10	45.0	3
AAACGAC	20	7.0149486E-4	45.0	37
TCGGAGG	80	0.0	45.0	27
CCCCGCA	20	7.0149486E-4	45.0	25