FastQCFastQC Report
Sat 14 Jan 2017
SRR2936620.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936620.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159070
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT19331.215188281888477No Hit
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC6510.40925378764066134No Hit
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC4110.2583768152385742No Hit
GGGGGAGGGCTTATTAATACACCTAATCGGAGGAGCTACTCTAGTATTAAT4010.2520902747218206No Hit
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT3300.20745583705286982Illumina Single End Adapter 1 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC3100.19488275601936253No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG2990.18796756145093355No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGC2930.18419563714088136No Hit
TCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC2800.17602313446910164No Hit
ACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC1770.11127176714653926No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAATACA800.045.015
CGAACTT207.0149486E-445.027
GTTCTCG207.0149486E-445.043
CGAAAGG207.0149486E-445.02
ACGTTGT207.0149486E-445.038
TTAGCGG207.0149486E-445.02
GCGAAAG207.0149486E-445.01
CTTTTCG253.875613E-545.012
CTTTTCA207.0149486E-445.011
AGCCACT253.875613E-545.036
GGCCGGT207.0149486E-445.09
GCACGTT207.0149486E-445.036
AAGACCC207.0149486E-445.021
ACCGACT207.0149486E-445.041
TCTAGTA750.045.040
CGACAAT207.0149486E-445.020
TATTGGG453.8016879E-1045.03
AAACGAC207.0149486E-445.037
TCGGAGG800.045.027
CCCCGCA207.0149486E-445.025