SRR2936616.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936616.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	828044
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGC	27014	3.2623870229118257	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCG	26617	3.214442710773824	No Hit
GAATCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTC	21727	2.6238943824241225	No Hit
GCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	6873	0.8300283559810832	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6844	0.8265261266309519	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCT	5277	0.637284975194555	No Hit
GAACTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCT	4290	0.5180884107607808	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTC	3597	0.4343972059455778	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACAATCCCTCGTA	2976	0.3594011912410452	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGC	2480	0.299500992700871	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCG	2344	0.28307674471404903	No Hit
GAATCTATCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTC	2312	0.27921221577597327	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTT	1455	0.17571530015313197	No Hit
CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGCT	1286	0.15530575669891938	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACAATCCCT	1178	0.14226297153291373	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATG	922	0.11134674002830768	No Hit
CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	919	0.11098444044036308	TruSeq Adapter, Index 19 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	20	7.0321443E-4	45.0	31
CTCGTCC	25	3.889857E-5	45.0	37
CGACGGT	20	7.0321443E-4	45.0	28
CGACGCG	25	3.889857E-5	45.0	15
CGACCGG	20	7.0321443E-4	45.0	2
TAGCACG	20	7.0321443E-4	45.0	1
CGCTCAC	20	7.0321443E-4	45.0	34
ACATGCG	25	3.889857E-5	45.0	1
TATCGCG	20	7.0321443E-4	45.0	1
TACCGAA	25	3.889857E-5	45.0	29
ACTACGG	60	0.0	44.999996	2
CGGTCGG	30	2.1647647E-6	44.999996	2
TTCGCGG	65	0.0	44.999996	2
CGTTTTT	3830	0.0	43.53133	1
ACGGCTG	3165	0.0	43.151657	8
TACGGCT	2925	0.0	43.0	7
CGGCTGT	3145	0.0	42.782196	9
TGATACC	3025	0.0	41.876034	4
GATACCT	3055	0.0	41.61211	5
ATGATAC	8290	0.0	40.765984	3