SRR2936615.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936615.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	507559
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2658	0.5236829609956675	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG	2077	0.40921351015349944	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGC	1907	0.37571986704993904	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC	1673	0.32961685242503824	No Hit
GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC	1558	0.3069593879726298	Illumina PCR Primer Index 2 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC	892	0.1757431155786815	RNA PCR Primer, Index 10 (95% over 23bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	698	0.13752095815461848	No Hit
CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGCT	614	0.12097115803285922	TruSeq Adapter, Index 10 (95% over 24bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	611	0.12038009374279642	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	529	0.10422433648107905	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	25	3.887716E-5	45.000004	1
TCACACC	50	2.1827873E-11	45.000004	16
ATTCGTA	35	1.2101373E-7	45.000004	32
TTCGTAC	35	1.2101373E-7	45.000004	33
TATTGCG	25	3.887716E-5	45.000004	1
GAAACGT	35	1.2101373E-7	45.000004	20
CGGGACG	25	3.887716E-5	45.000004	6
CGTACAT	35	1.2101373E-7	45.000004	35
CGTAATG	25	3.887716E-5	45.000004	24
TAAGGCG	25	3.887716E-5	45.000004	5
CCTGCGT	25	3.887716E-5	45.000004	23
TGCGTTC	25	3.887716E-5	45.000004	25
CGAAATC	20	7.0295593E-4	45.0	22
CACGGGC	40	6.8030204E-9	45.0	4
CACGATA	20	7.0295593E-4	45.0	18
CGTTCGA	20	7.0295593E-4	45.0	14
CCGTCAA	20	7.0295593E-4	45.0	22
AACGGTC	20	7.0295593E-4	45.0	30
ATCCGCA	20	7.0295593E-4	45.0	11
CTAACGG	20	7.0295593E-4	45.0	2