##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936615.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 507559 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.170778175542154 31.0 31.0 33.0 28.0 34.0 2 31.200626922190327 31.0 31.0 34.0 28.0 34.0 3 30.99887500763458 31.0 31.0 34.0 28.0 34.0 4 34.96032973506528 35.0 35.0 37.0 32.0 37.0 5 35.20206911905808 35.0 35.0 37.0 33.0 37.0 6 35.18562571050853 36.0 35.0 37.0 32.0 37.0 7 30.970797483642297 35.0 35.0 37.0 0.0 37.0 8 33.03743998234688 36.0 35.0 37.0 17.0 37.0 9 36.269282979909725 39.0 35.0 39.0 32.0 39.0 10 36.13284169919162 37.0 35.0 39.0 32.0 39.0 11 36.40693791263676 38.0 35.0 39.0 32.0 39.0 12 36.477089363010016 38.0 35.0 39.0 32.0 39.0 13 36.38036563236983 38.0 35.0 39.0 32.0 39.0 14 37.44360557097796 39.0 36.0 40.0 32.0 41.0 15 37.645595881464025 39.0 36.0 41.0 33.0 41.0 16 37.591621860709786 39.0 36.0 41.0 33.0 41.0 17 37.50094668797125 39.0 36.0 41.0 32.0 41.0 18 37.41143788209843 39.0 36.0 40.0 32.0 41.0 19 37.238577190040964 39.0 36.0 40.0 32.0 41.0 20 37.23888257325749 39.0 35.0 40.0 32.0 41.0 21 37.259299904050565 39.0 35.0 40.0 32.0 41.0 22 37.342381870876096 39.0 35.0 40.0 32.0 41.0 23 37.396679006775564 39.0 35.0 40.0 33.0 41.0 24 37.3246144783168 39.0 35.0 41.0 32.0 41.0 25 37.01045395707691 39.0 35.0 40.0 32.0 41.0 26 36.98139920679172 39.0 35.0 40.0 32.0 41.0 27 36.98726453476345 39.0 35.0 40.0 32.0 41.0 28 37.0122488223044 39.0 35.0 40.0 32.0 41.0 29 37.04544102262003 39.0 35.0 40.0 32.0 41.0 30 36.83319377648707 39.0 35.0 40.0 31.0 41.0 31 36.784618142915406 39.0 35.0 40.0 31.0 41.0 32 36.65646949418688 39.0 35.0 40.0 31.0 41.0 33 36.54285511635101 39.0 35.0 40.0 30.0 41.0 34 36.49414156777833 39.0 35.0 40.0 30.0 41.0 35 36.45318475290557 39.0 35.0 40.0 30.0 41.0 36 36.37433283618259 39.0 35.0 40.0 30.0 41.0 37 36.27481731187901 39.0 35.0 40.0 30.0 41.0 38 36.176688818442784 39.0 35.0 40.0 30.0 41.0 39 36.137398804868006 39.0 35.0 40.0 30.0 41.0 40 36.04000717158005 38.0 35.0 40.0 30.0 41.0 41 35.88197628256025 38.0 35.0 40.0 29.0 41.0 42 35.89668984295422 38.0 35.0 40.0 29.0 41.0 43 35.84630161222636 38.0 35.0 40.0 29.0 41.0 44 35.660439476001805 38.0 35.0 40.0 28.0 41.0 45 35.591781448068105 38.0 35.0 40.0 28.0 41.0 46 35.50062948346892 38.0 34.0 40.0 28.0 41.0 47 35.442862800186774 38.0 34.0 40.0 28.0 41.0 48 35.35814358527777 38.0 34.0 40.0 27.0 41.0 49 35.27328842558205 38.0 34.0 40.0 27.0 41.0 50 35.10195070917864 38.0 34.0 40.0 27.0 41.0 51 33.40703642335177 36.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 17.0 9 43.0 10 42.0 11 41.0 12 25.0 13 15.0 14 30.0 15 34.0 16 75.0 17 118.0 18 243.0 19 415.0 20 684.0 21 1053.0 22 1507.0 23 2125.0 24 3167.0 25 4154.0 26 5563.0 27 6519.0 28 7583.0 29 8735.0 30 10887.0 31 13772.0 32 18202.0 33 26057.0 34 40582.0 35 45057.0 36 50753.0 37 75635.0 38 101374.0 39 83045.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.159514460387854 21.074003219330166 23.24202703528063 12.524455285001348 2 32.70910376921698 24.7027439174559 24.35618322204906 18.231969091278057 3 33.46408988905723 23.986176976469732 26.44520144456112 16.104531689911912 4 29.40761566635603 24.937987504900907 26.905049462230007 18.749347366513057 5 26.272413650432757 29.851307926763194 24.05887788414746 19.81740053865659 6 26.92455458380208 35.28240066672052 23.803538110840318 13.989506638637083 7 67.5371730183092 18.366928770842406 10.177536010591872 3.918362200256522 8 76.89825222289429 7.665709799254865 10.285897797103392 5.15014018074746 9 70.09194990139078 9.131746260040705 12.985485431250357 7.790818407318165 10 40.771614728534026 25.871869083200178 19.670816594721007 13.68569959354479 11 31.955496799386868 26.56262621685361 24.463559901410477 17.018317082349046 12 31.450924917103233 22.38045232179904 27.98984945592532 18.178773305172406 13 24.645213659889787 25.89708782624286 29.634781375170178 19.82291713869718 14 19.49369432913218 29.9980888921288 28.59963078184014 21.908585996898882 15 18.9755279681771 27.321946808154323 34.865897363656245 18.836627860012335 16 20.76192127417699 25.20830090688964 33.36518513118672 20.664592687746648 17 20.86910093210839 25.334197600673026 29.759495940373437 24.037205526845153 18 21.423716257617343 27.27210038635902 29.575871967593915 21.72831138842972 19 24.36268492923975 27.878926390823526 26.27930940048349 21.479079279453224 20 26.86761539052603 26.063373913180538 28.103530821047407 18.96547987524603 21 24.697621360275356 27.349726829787276 27.903751091006168 20.048900718931197 22 21.921392389850244 26.010769191364947 27.54083761690759 24.527000801877218 23 22.471279201038698 28.001867763156596 27.93330430550931 21.593548730295396 24 23.150215048890868 24.754166510691366 29.357769244560732 22.73784919585703 25 21.20876587746449 27.608021924544733 28.074371649404306 23.10884054858647 26 21.213691413215017 28.202041536057877 28.77951134744926 21.804755703277845 27 22.697853845562783 28.178595985885384 28.048955884931605 21.07459428362023 28 19.44522705734703 29.29708664411428 30.485322888570586 20.772363409968104 29 21.556114658591415 26.25015022884039 30.690225175792367 21.50350993677582 30 22.835571825147422 26.218626800037043 29.407418644926008 21.53838272988953 31 23.402599500747694 28.51983710268166 26.061403698880326 22.01615969769032 32 23.109234591446512 28.28479053666667 28.211301543268863 20.394673328617955 33 22.66573935246937 27.61747895318574 27.413758794544087 22.303022899800812 34 20.57731219424737 28.231003686270956 29.012587699164037 22.179096420317638 35 21.476518000862953 25.12397573484068 29.035048142186426 24.36445812210994 36 22.090436776808215 28.018220541848336 28.022555013308796 21.868787668034653 37 22.055366962264486 29.001751520512887 28.615786539101855 20.32709497812077 38 20.928798425404732 27.755393954200397 27.574134238581134 23.74167338181374 39 21.717278188348548 25.50225688048089 29.496866374155516 23.283598557015047 40 23.020968990797126 25.206330692589436 30.42661050242435 21.34608981418909 41 18.788751652517245 27.116847499502523 29.077210728210908 25.017190119769328 42 21.091144083741987 27.11901473523275 28.033194170529928 23.756647010495332 43 23.596271566458284 26.000918119863897 27.504585673783737 22.89822463989408 44 21.84613020358224 27.009273798711085 28.397683816068675 22.746912181637995 45 20.672079502087442 26.279703443343532 28.20893728610861 24.839279768460415 46 21.570103180122903 28.111608699678264 27.610189160274963 22.70809895992387 47 20.838365589025116 26.04465687732855 30.6001863822728 22.516791151373535 48 21.251125484918994 24.82332103262872 29.594786024875923 24.33076745757636 49 20.410238021589606 24.88183639734494 30.528076538885134 24.17984904218032 50 19.11600424778203 26.014118555675303 30.043994885323677 24.82588231121899 51 19.62491060152613 25.208891971179703 28.0065962774771 27.159601149817064 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 359.0 1 573.0 2 787.0 3 2798.5 4 4810.0 5 3306.0 6 1802.0 7 1686.0 8 1570.0 9 1564.5 10 1559.0 11 1578.0 12 1597.0 13 1539.5 14 1482.0 15 1444.5 16 1407.0 17 1377.5 18 1348.0 19 1447.5 20 1547.0 21 1821.5 22 2096.0 23 2300.5 24 2505.0 25 3097.5 26 4680.5 27 5671.0 28 6457.0 29 7243.0 30 8513.5 31 9784.0 32 10343.5 33 10903.0 34 12895.5 35 14888.0 36 15814.0 37 16740.0 38 18824.5 39 20909.0 40 24667.0 41 28425.0 42 30547.0 43 32669.0 44 40758.0 45 48847.0 46 47381.0 47 45915.0 48 44108.0 49 42301.0 50 36629.0 51 30957.0 52 28302.5 53 25648.0 54 24544.5 55 23441.0 56 22300.5 57 21160.0 58 21727.0 59 22294.0 60 22381.0 61 22468.0 62 19850.5 63 17233.0 64 14599.0 65 11965.0 66 9777.0 67 7589.0 68 6507.5 69 5426.0 70 4551.5 71 3677.0 72 2885.5 73 2094.0 74 1660.0 75 943.0 76 660.0 77 575.0 78 490.0 79 321.0 80 152.0 81 123.0 82 94.0 83 79.0 84 64.0 85 46.0 86 28.0 87 22.5 88 17.0 89 12.5 90 8.0 91 8.0 92 8.0 93 5.5 94 3.0 95 2.0 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 507559.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.29442012940149 #Duplication Level Percentage of deduplicated Percentage of total 1 73.75180881692918 23.08020090420279 2 9.675893099794962 6.056029275843209 3 3.7952175343908463 3.563073960110952 4 2.1380327262951235 2.6763397754835707 5 1.4454452782398592 2.2617185905648896 6 1.020504549898628 1.9161658877096062 7 0.766111457810017 1.6782509678658444 8 0.6073727180798495 1.5205901611781873 9 0.48027057168854087 1.3526810141588133 >10 5.91117901573161 43.998128880563755 >50 0.3535330186655034 6.72345258347276 >100 0.048351762765974714 2.5760723656030984 >500 0.0031397248549334227 0.6571352498723595 >1k 0.0031397248549334227 1.940160383370157 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2658 0.5236829609956675 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG 2077 0.40921351015349944 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGC 1907 0.37571986704993904 No Hit GAATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC 1673 0.32961685242503824 No Hit GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 1558 0.3069593879726298 Illumina PCR Primer Index 2 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 892 0.1757431155786815 RNA PCR Primer, Index 10 (95% over 23bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 698 0.13752095815461848 No Hit CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGCT 614 0.12097115803285922 TruSeq Adapter, Index 10 (95% over 24bp) AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 611 0.12038009374279642 No Hit GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT 529 0.10422433648107905 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13830904387470225 0.0 2 0.0 0.0 0.0 0.8399023561792817 0.0 3 0.0 0.0 0.0 1.0434254933909162 0.0 4 0.0 0.0 0.0 1.408703224649745 0.0 5 0.0 0.0 0.0 2.602456069146641 0.0 6 0.0 0.0 0.0 3.127321158722434 0.0 7 0.0 0.0 0.0 3.6829215913814948 0.0 8 0.0 0.0 0.0 4.576216755096452 0.0 9 0.0 0.0 0.0 4.875689328728286 0.0 10 0.0 0.0 0.0 6.012108937089087 0.0 11 0.0 0.0 0.0 7.008052265844956 0.0 12 0.0 0.0 0.0 8.174616152998961 0.0 13 0.0 0.0 0.0 8.544031334288231 0.0 14 0.0 0.0 0.0 8.708544228355718 0.0 15 0.0 0.0 0.0 9.057469180922809 0.0 16 0.0 0.0 0.0 9.684785414109493 0.0 17 0.0 0.0 0.0 10.339684647499109 0.0 18 0.0 0.0 0.0 11.10885631030087 0.0 19 0.0 0.0 0.0 11.543485584927073 0.0 20 1.9702143002094338E-4 0.0 0.0 11.970234002352436 0.0 21 1.9702143002094338E-4 0.0 0.0 12.513225063490156 0.0 22 1.9702143002094338E-4 0.0 0.0 13.072174860459572 0.0 23 1.9702143002094338E-4 0.0 0.0 13.59585782145524 0.0 24 1.9702143002094338E-4 0.0 0.0 14.046445831913138 0.0 25 1.9702143002094338E-4 0.0 0.0 14.46235807068735 0.0 26 1.9702143002094338E-4 0.0 0.0 14.816208559004963 0.0 27 1.9702143002094338E-4 0.0 0.0 15.180698204543708 0.0 28 1.9702143002094338E-4 0.0 0.0 15.542626571492182 0.0 29 1.9702143002094338E-4 0.0 0.0 15.936472410104047 0.0 30 1.9702143002094338E-4 0.0 0.0 16.40892979929427 0.0 31 1.9702143002094338E-4 0.0 0.0 16.83548119528961 0.0 32 1.9702143002094338E-4 0.0 0.0 17.242921512572924 0.0 33 1.9702143002094338E-4 0.0 0.0 17.639722672635102 0.0 34 1.9702143002094338E-4 0.0 0.0 18.04637490419833 0.0 35 1.9702143002094338E-4 0.0 0.0 18.475881621643985 0.0 36 1.9702143002094338E-4 0.0 0.0 18.883321938927295 0.0 37 1.9702143002094338E-4 0.0 0.0 19.296081834821173 0.0 38 1.9702143002094338E-4 0.0 0.0 19.683228944812328 0.0 39 1.9702143002094338E-4 0.0 0.0 20.065056476192915 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTAGCG 25 3.887716E-5 45.000004 1 TCACACC 50 2.1827873E-11 45.000004 16 ATTCGTA 35 1.2101373E-7 45.000004 32 TTCGTAC 35 1.2101373E-7 45.000004 33 TATTGCG 25 3.887716E-5 45.000004 1 GAAACGT 35 1.2101373E-7 45.000004 20 CGGGACG 25 3.887716E-5 45.000004 6 CGTACAT 35 1.2101373E-7 45.000004 35 CGTAATG 25 3.887716E-5 45.000004 24 TAAGGCG 25 3.887716E-5 45.000004 5 CCTGCGT 25 3.887716E-5 45.000004 23 TGCGTTC 25 3.887716E-5 45.000004 25 CGAAATC 20 7.0295593E-4 45.0 22 CACGGGC 40 6.8030204E-9 45.0 4 CACGATA 20 7.0295593E-4 45.0 18 CGTTCGA 20 7.0295593E-4 45.0 14 CCGTCAA 20 7.0295593E-4 45.0 22 AACGGTC 20 7.0295593E-4 45.0 30 ATCCGCA 20 7.0295593E-4 45.0 11 CTAACGG 20 7.0295593E-4 45.0 2 >>END_MODULE