SRR2936614.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936614.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	792246
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5123	0.6466425832380347	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCG	4460	0.5629564554443949	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGC	4280	0.5402362397538139	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC	4013	0.5065345864794522	No Hit
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	1339	0.16901316005382166	TruSeq Adapter, Index 14 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCT	1039	0.1311461339028534	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	877	0.11069793978133054	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGCGAC	20	7.0319563E-4	45.000004	45
CGGTCTA	40	6.8102963E-9	45.000004	31
ATCGTAC	25	3.8897044E-5	45.0	6
AAACCGT	25	3.8897044E-5	45.0	35
CGAATAT	90	0.0	42.5	14
TACGGGA	105	0.0	40.714287	4
CGTTTTT	2255	0.0	40.609756	1
CGAATGG	50	1.0804797E-9	40.5	2
TACGGCT	575	0.0	39.521744	7
TCACGAC	40	3.4564073E-7	39.375004	25
ACGGGAT	270	0.0	39.166668	5
CGTTTTA	140	0.0	38.571426	1
ACGGTTG	35	6.245831E-6	38.571426	1
GCTACGA	100	0.0	38.25	10
TCGTACT	30	1.1396018E-4	37.499996	7
TCACGTA	30	1.1396018E-4	37.499996	32
TTTAGCG	55	2.746674E-9	36.81818	1
ACGGCTG	710	0.0	36.126762	8
GGGCGAT	785	0.0	36.114647	7
CGATTTC	25	0.002106714	36.0	26