SRR2936612.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936612.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	486864
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3355	0.6891041440730882	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG	1667	0.34239541227118864	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC	1596	0.32781228433402343	No Hit
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	1260	0.2587991718426501	TruSeq Adapter, Index 15 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	1190	0.24442144007361397	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	669	0.13741003647835948	TruSeq Adapter, Index 15 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	499	0.10249268789641461	TruSeq Adapter, Index 21 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGAGT	35	1.2099918E-7	45.000004	30
GCGCCTA	25	3.8874816E-5	45.0	41
TCCGTGA	25	3.8874816E-5	45.0	36
CCCTTCG	20	7.0292765E-4	45.0	39
CTCGACG	25	3.8874816E-5	45.0	1
CGATGCA	20	7.0292765E-4	45.0	10
TATACGG	20	7.0292765E-4	45.0	2
TACGTTG	20	7.0292765E-4	45.0	1
ATATTCG	20	7.0292765E-4	45.0	16
TACGAAT	100	0.0	42.75	12
CGAATAT	100	0.0	42.75	14
CGTTTTT	1720	0.0	40.944767	1
GCTACGA	110	0.0	40.909092	10
AGCTACG	110	0.0	40.909092	9
CGTTTTA	105	0.0	40.714287	1
ACCTATG	100	0.0	40.5	34
CGTGCGG	40	3.452751E-7	39.375	2
GTAGCCG	35	6.240871E-6	38.57143	43
CCTATGC	105	0.0	38.57143	35
CTGTCCG	30	1.1389554E-4	37.500004	1