SRR2936611.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936611.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	731474
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2525	0.34519340400342324	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGC	1646	0.22502508633252855	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCG	1520	0.20779959369711024	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1498	0.20479196799886257	No Hit
GCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC	1382	0.18893357795355678	Illumina PCR Primer Index 5 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTC	1269	0.17348531868528477	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	896	0.12249239207408602	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCGT	20	7.0316024E-4	45.0	42
CGTTAGG	40	6.8084773E-9	45.0	2
AAACGCG	25	3.8894097E-5	45.0	1
GTATGCG	40	6.8084773E-9	45.0	1
TTCGGAC	25	3.8894097E-5	45.0	14
ATAACGC	35	1.2111195E-7	45.0	11
CCCGCGA	25	3.8894097E-5	45.0	29
ATCGATC	20	7.0316024E-4	45.0	12
AACCCGC	90	0.0	40.0	21
CGGCTAG	40	3.4559162E-7	39.375	2
CGTTTTT	1100	0.0	39.068184	1
CCATACG	75	0.0	39.0	2
CTATGCG	35	6.2451745E-6	38.571426	1
CTCGTAC	35	6.2451745E-6	38.571426	29
CGACAAT	70	0.0	38.571426	20
TCGACAA	70	0.0	38.571426	19
CTACGGG	100	0.0	38.25	3
ACGGGAC	145	0.0	37.24138	5
ACGGGAT	135	0.0	36.666664	5
TTACACG	80	0.0	36.5625	34