SRR2936607.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936607.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	571279
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCG	8546	1.4959415627040378	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGC	8255	1.4450032295953465	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC	5899	1.032595281815015	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3373	0.5904295449333863	No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	2213	0.3873763957715932	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCT	1490	0.2608182691819584	No Hit
GAACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT	1289	0.22563405971513045	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCG	1022	0.17889682624426945	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTC	993	0.17382049751522463	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTA	968	0.16944435205915148	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGC	943	0.16506820660307836	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	868	0.15193977023485897	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTT	683	0.11955629385991783	No Hit
GAATCTATCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC	612	0.10712804076467015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCGTT	20	7.0303027E-4	45.000004	19
GTATACG	20	7.0303027E-4	45.000004	1
TCGAGTG	20	7.0303027E-4	45.000004	1
CACGTCA	40	6.8048394E-9	45.000004	34
GCGCTTA	20	7.0303027E-4	45.000004	24
CACCGAA	20	7.0303027E-4	45.000004	16
GCATCCG	20	7.0303027E-4	45.000004	16
CCTCGAC	25	3.8883336E-5	45.0	30
CGGGCCA	25	3.8883336E-5	45.0	6
GCCTAAC	25	3.8883336E-5	45.0	16
CTCGACT	25	3.8883336E-5	45.0	31
TATAGCG	25	3.8883336E-5	45.0	1
CGCACGG	25	3.8883336E-5	45.0	2
TCGACTA	25	3.8883336E-5	45.0	32
TACGAAT	130	0.0	43.269234	12
CGTTTTA	130	0.0	43.269234	1
TACGGCT	1095	0.0	40.68493	7
TGATAGT	50	1.0786607E-9	40.5	32
ATCTACC	50	1.0786607E-9	40.5	15
CGTTTTT	1880	0.0	40.332447	1