SRR2936604.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936604.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	477241
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCG	10034	2.102501671063467	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGC	9335	1.9560347916461496	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTC	7147	1.4975662191639025	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3258	0.6826739529923037	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC	2259	0.4733457519366525	TruSeq Adapter, Index 14 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT	1850	0.3876448167697243	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTC	1284	0.2690464566120681	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTA	1237	0.2591981828887292	No Hit
GAACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCT	1220	0.25563604132922363	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCG	1026	0.21498572000310115	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGC	983	0.20597559723494002	No Hit
GAATCTATCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTC	772	0.16176313434931197	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC	623	0.13054201126893958	TruSeq Adapter, Index 14 (95% over 22bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	569	0.11922697337403954	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAT	30	2.1628239E-6	45.000004	30
TCGTTCA	20	7.0291356E-4	45.0	16
GGGTCGA	25	3.887366E-5	45.0	7
CGACCCT	25	3.887366E-5	45.0	12
TAACGCC	25	3.887366E-5	45.0	12
CGTTCAT	20	7.0291356E-4	45.0	17
GCCGATT	35	1.2099372E-7	45.0	9
ATATCGT	20	7.0291356E-4	45.0	30
CCGTACT	25	3.887366E-5	45.0	33
AGTTGCG	25	3.887366E-5	45.0	1
TGACACG	20	7.0291356E-4	45.0	12
TTGCGTG	20	7.0291356E-4	45.0	1
ACGTCCG	20	7.0291356E-4	45.0	1
CGCAATT	25	3.887366E-5	45.0	31
GTAAGCG	20	7.0291356E-4	45.0	1
GGCGAAT	25	3.887366E-5	45.0	8
CGATCCT	20	7.0291356E-4	45.0	10
TAAGACG	20	7.0291356E-4	45.0	1
TAATGAC	35	1.2099372E-7	45.0	9
ACGAATT	20	7.0291356E-4	45.0	8