SRR2936601.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936601.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	816628
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCG	7385	0.9043285314733269	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGC	7108	0.8704085581194865	No Hit
GAATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	6732	0.8243655617980281	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4379	0.5362294704565604	No Hit
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	2279	0.2790744378101167	TruSeq Adapter, Index 15 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT	1579	0.19335609359463551	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCT	1436	0.1758450604191872	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTT	1270	0.15551756736237307	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1219	0.14927237371238802	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTC	1152	0.14106790362319196	No Hit
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	821	0.1005353722870144	TruSeq Adapter, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	45	3.8380676E-10	45.0	2
CGTATAG	20	7.032087E-4	45.0	2
TTCGCAC	20	7.032087E-4	45.0	22
CGTCCAT	20	7.032087E-4	45.0	29
GCTACGA	195	0.0	43.846153	10
TACGAAT	205	0.0	41.707317	12
CGAATAT	210	0.0	40.714287	14
TCACGAC	90	0.0	40.0	25
AGGCGAT	130	0.0	39.80769	7
CGTTTTT	1850	0.0	39.77027	1
AACGGCT	80	0.0	39.375	7
TGATACC	975	0.0	39.0	4
ATGGTCG	35	6.246066E-6	38.57143	44
ATAACGC	35	6.246066E-6	38.57143	11
TACGGCT	905	0.0	38.28729	7
ACGGTCT	95	0.0	37.894737	30
GTATCGC	30	1.1396325E-4	37.499996	5
GCGATAT	30	1.1396325E-4	37.499996	9
ACGCTAG	30	1.1396325E-4	37.499996	1
TACGTTC	30	1.1396325E-4	37.499996	37