SRR2936600.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936600.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	560773
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGC	11041	1.9688893723485261	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	10815	1.9285878599718604	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG	10626	1.8948843828073034	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5992	1.068525053809652	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	3422	0.610229094482081	No Hit
GAACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT	2957	0.5273078411407112	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT	2074	0.36984662243010985	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTC	1722	0.3070761252770729	No Hit
GAATCTATCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	1596	0.2846071405007017	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTT	1452	0.2589283007562775	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG	1329	0.23699429180791518	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTA	1324	0.23610266542790043	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGC	1193	0.2127420542715145	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	822	0.14658337687442155	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	790	0.1408769680423273	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCT	20	7.0301915E-4	45.000004	14
CCTACGC	20	7.0301915E-4	45.000004	39
ATCCGTG	20	7.0301915E-4	45.000004	16
CGCTCCA	20	7.0301915E-4	45.000004	17
AAGTTCG	20	7.0301915E-4	45.000004	1
CTCTCTA	20	7.0301915E-4	45.000004	15
ATCGCAA	20	7.0301915E-4	45.000004	14
TCGATAC	25	3.888241E-5	45.0	40
GTATGCG	25	3.888241E-5	45.0	1
CAGTACG	25	3.888241E-5	45.0	43
TTCGATG	25	3.888241E-5	45.0	1
CGTTTTT	3175	0.0	43.228344	1
TACGGCT	1435	0.0	42.334496	7
ACGGCTG	1585	0.0	41.735016	8
GATGAAT	295	0.0	40.42373	20
CGGCTGT	1630	0.0	40.306747	9
CTATCTC	225	0.0	40.0	5
CGATGAA	310	0.0	39.919353	19
CGTTTTA	200	0.0	39.375	1
CCGATGA	320	0.0	38.67188	18