SRR2936599.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936599.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	606028
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	12470	2.0576607021457756	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	11637	1.9202083072069276	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	10463	1.7264878850482155	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3938	0.6498049595068215	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	2910	0.48017583345984016	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT	2345	0.3869458176849915	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	2182	0.3600493706561413	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTC	1962	0.32374741761106746	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTT	1545	0.25493871570290483	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTA	1365	0.22523711775693533	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	1047	0.17276429471905588	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	1041	0.17177424145419024	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTT	836	0.13794742157128054	No Hit
GAATCTATCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	751	0.12392166698568383	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGT	20	7.030643E-4	45.000004	36
ACCGACA	20	7.030643E-4	45.000004	16
TTCGTTC	20	7.030643E-4	45.000004	14
ATTCGAA	30	2.1637952E-6	45.000004	13
CGACAAT	30	2.1637952E-6	45.000004	20
GTGCGAT	20	7.030643E-4	45.000004	30
AAGTCGC	20	7.030643E-4	45.000004	22
CGTTCCA	25	3.8886163E-5	44.999996	26
TTACGTA	25	3.8886163E-5	44.999996	44
AACGGCT	100	0.0	42.749996	7
ACGGCTG	1590	0.0	42.45283	8
TACGGCT	1500	0.0	42.15	7
CGTTTTA	145	0.0	41.89655	1
CGTTTTT	1920	0.0	41.601566	1
TTAGACG	55	6.002665E-11	40.909092	1
CATACGA	55	6.002665E-11	40.909092	18
GCGATCA	55	6.002665E-11	40.909092	9
GATACCT	1575	0.0	40.57143	5
CGGCTGT	1665	0.0	40.0	9
TGATACC	1615	0.0	39.566563	4