SRR2936598.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936598.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	577566
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3264	0.5651302188840756	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGC	2931	0.5074744704501304	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCG	2892	0.500721995408317	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC	2737	0.47388523562675083	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	1196	0.20707590128227768	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	788	0.13643462392176825	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	600	0.1038842314125139	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	40	6.8048394E-9	45.000004	25
CCTAATA	20	7.0303667E-4	45.000004	41
CGCCTAA	20	7.0303667E-4	45.000004	28
AACGGAT	20	7.0303667E-4	45.000004	34
TACGATG	20	7.0303667E-4	45.000004	1
CGAATCA	20	7.0303667E-4	45.000004	39
GCGATCA	40	6.8048394E-9	45.000004	9
ACTCGCT	30	2.1636188E-6	45.000004	38
AGTCGAC	20	7.0303667E-4	45.000004	30
ATGCTCG	25	3.8883874E-5	45.0	1
GCTCGAC	25	3.8883874E-5	45.0	15
TAGCCGT	75	0.0	42.0	44
TACGAAT	135	0.0	41.666664	12
ACAACGA	185	0.0	41.351353	13
GTTAGCG	55	6.002665E-11	40.909092	1
TTAACGG	55	6.002665E-11	40.909092	2
CACAACG	190	0.0	40.263157	12
GTACTAG	45	1.9254003E-8	40.0	1
TACGGCT	300	0.0	39.75	7
CTAGCGG	85	0.0	39.705883	2