SRR2936597.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936597.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	152456
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTC	458	0.30041454583617566	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCG	441	0.2892637875846146	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGC	410	0.2689300519494149	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	233	0.15283098074198456	No Hit
GCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	221	0.14495985727029437	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	25	3.8748498E-5	45.000004	5
CCACAAT	20	7.014027E-4	45.0	11
GTTGATC	35	1.2026794E-7	45.0	16
AACGTGA	20	7.014027E-4	45.0	18
TTTCGAC	20	7.014027E-4	45.0	24
GACGTAA	20	7.014027E-4	45.0	19
CGCATGG	20	7.014027E-4	45.0	2
TGTATCG	20	7.014027E-4	45.0	4
TGAAACG	20	7.014027E-4	45.0	4
AGACGTA	20	7.014027E-4	45.0	18
TCGTGAA	20	7.014027E-4	45.0	27
CTAGTAG	20	7.014027E-4	45.0	28
TAATTCG	20	7.014027E-4	45.0	23
TACGAAT	20	7.014027E-4	45.0	12
GTCCGCT	20	7.014027E-4	45.0	43
CGAATAT	20	7.014027E-4	45.0	14
AATTCGT	20	7.014027E-4	45.0	24
GTATCGC	20	7.014027E-4	45.0	5
TAGGCAC	20	7.014027E-4	45.0	6
GGTCTAT	20	7.014027E-4	45.0	8