SRR2936596.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936596.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	197715
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2496	1.2624231848873377	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTC	563	0.28475330652707176	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCG	503	0.2544065953518954	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	446	0.22557721973547784	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGC	390	0.19725362263864654	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	274	0.13858331436663884	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTGC	20	7.019105E-4	45.000004	39
AGTGCCG	20	7.019105E-4	45.000004	42
CGTCCCC	20	7.019105E-4	45.000004	39
AGTACGG	20	7.019105E-4	45.000004	2
TCAGTCG	20	7.019105E-4	45.000004	15
CTACGAA	35	1.2051169E-7	45.0	11
TACGAAT	35	1.2051169E-7	45.0	12
CGAATAT	35	1.2051169E-7	45.0	14
GCTTTGA	35	1.2051169E-7	45.0	40
CGTTTTA	150	0.0	43.5	1
CGTTTTT	980	0.0	43.392857	1
CGACCAA	50	1.0713848E-9	40.5	29
CGAGACA	50	1.0713848E-9	40.5	22
TCAAGCG	50	1.0713848E-9	40.5	17
CTATGCT	40	3.4388904E-7	39.375004	36
GCTACGA	40	3.4388904E-7	39.375004	10
AGCTACG	40	3.4388904E-7	39.375004	9
GACCTAT	40	3.4388904E-7	39.375004	33
ATCTATC	35	6.2220806E-6	38.571426	3
CGGTTTA	30	1.1365065E-4	37.499996	1