SRR2936595.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936595.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	209549
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	675	0.32212036325632665	No Hit
GAATCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTC	438	0.20902032460188308	No Hit
GCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGC	365	0.17418360383490258	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGCT	347	0.16559372748140053	TruSeq Adapter, Index 16 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGC	334	0.15938992789276016	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCG	267	0.12741649924361367	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGC	241	0.11500890006633294	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACGG	20	7.02007E-4	45.000004	2
CGGTTTT	30	2.1569795E-6	45.000004	1
CGCATGG	40	6.7684596E-9	45.000004	2
CGGTTAA	20	7.02007E-4	45.000004	35
TACGGTT	20	7.02007E-4	45.000004	33
CGATTGA	40	6.7684596E-9	45.000004	10
TACGGGT	20	7.02007E-4	45.000004	4
TACGCGG	20	7.02007E-4	45.000004	2
ACAGCGG	30	2.1569795E-6	45.000004	2
ACGGTTA	20	7.02007E-4	45.000004	34
CGGGTCT	25	3.8798542E-5	45.0	6
GCCCTAC	25	3.8798542E-5	45.0	26
GGTATGA	25	3.8798542E-5	45.0	8
AGCTGCG	25	3.8798542E-5	45.0	1
TGCACGG	25	3.8798542E-5	45.0	2
GGCGATT	120	0.0	43.125004	8
GGCGATA	60	3.6379788E-12	41.250004	8
CGTTTTT	340	0.0	41.02941	1
CAGTCTC	100	0.0	40.5	6
GCGACTG	45	1.9153958E-8	40.0	20